miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>48560_gma-miR168:pmrd
Length = 125
Score = 226 bits (114), Expect = 3e-60
Identities = 116/117 (99%)
Strand = Plus / Plus
Query: 1 tgtgcggtctctaattcgcttggtgcaggtcgggaaccggttttcgcgcggaatgganga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 4 tgtgcggtctctaattcgcttggtgcaggtcgggaaccggttttcgcgcggaatggagga 63
Query: 61 gcggtcgccggcgccgaattggatcccgccttgcatcaactgaatcggaggccgcgg 117
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64 gcggtcgccggcgccgaattggatcccgccttgcatcaactgaatcggaggccgcgg 120
>51650_ptc-miR168a:pmrd
Length = 160
Score = 73.8 bits (37), Expect = 3e-14
Identities = 37/37 (100%)
Strand = Plus / Plus
Query: 75 cgaattggatcccgccttgcatcaactgaatcggagg 111
|||||||||||||||||||||||||||||||||||||
Sbjct: 124 cgaattggatcccgccttgcatcaactgaatcggagg 160
Score = 56.0 bits (28), Expect = 6e-09
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 6 ggtctctaattcgcttggtgcaggtcgggaac 37
||||||| ||||||||||||||||||||||||
Sbjct: 1 ggtctctgattcgcttggtgcaggtcgggaac 32
>51651_ptc-miR168b:pmrd
Length = 136
Score = 69.9 bits (35), Expect = 4e-13
Identities = 35/35 (100%)
Strand = Plus / Plus
Query: 76 gaattggatcccgccttgcatcaactgaatcggag 110
|||||||||||||||||||||||||||||||||||
Sbjct: 101 gaattggatcccgccttgcatcaactgaatcggag 135
Score = 63.9 bits (32), Expect = 2e-11
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 6 ggtctctaattcgcttggtgcaggtcgggaac 37
||||||||||||||||||||||||||||||||
Sbjct: 1 ggtctctaattcgcttggtgcaggtcgggaac 32
>54802_vvi-miR168:pmrd
Length = 132
Score = 67.9 bits (34), Expect = 2e-12
Identities = 34/34 (100%)
Strand = Plus / Plus
Query: 6 ggtctctaattcgcttggtgcaggtcgggaaccg 39
||||||||||||||||||||||||||||||||||
Sbjct: 1 ggtctctaattcgcttggtgcaggtcgggaaccg 34
Score = 58.0 bits (29), Expect = 2e-09
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 82 gatcccgccttgcatcaactgaatcggag 110
|||||||||||||||||||||||||||||
Sbjct: 99 gatcccgccttgcatcaactgaatcggag 127
>54388_rco-miR168:pmrd
Length = 156
Score = 67.9 bits (34), Expect = 2e-12
Identities = 34/34 (100%)
Strand = Plus / Plus
Query: 4 gcggtctctaattcgcttggtgcaggtcgggaac 37
||||||||||||||||||||||||||||||||||
Sbjct: 7 gcggtctctaattcgcttggtgcaggtcgggaac 40
Score = 63.9 bits (32), Expect = 2e-11
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 76 gaattggatcccgccttgcatcaactgaatcg 107
||||||||||||||||||||||||||||||||
Sbjct: 110 gaattggatcccgccttgcatcaactgaatcg 141
>47339_ath-miRf10239-akr:pmrd
Length = 129
Score = 63.9 bits (32), Expect = 2e-11
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 78 attggatcccgccttgcatcaactgaatcgga 109
||||||||||||||||||||||||||||||||
Sbjct: 91 attggatcccgccttgcatcaactgaatcgga 122
Score = 50.1 bits (25), Expect = 4e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 14 attcgcttggtgcaggtcgggaacc 38
|||||||||||||||||||||||||
Sbjct: 11 attcgcttggtgcaggtcgggaacc 35
>46957_ath-miR168a:pmrd
Length = 138
Score = 63.9 bits (32), Expect = 2e-11
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 78 attggatcccgccttgcatcaactgaatcgga 109
||||||||||||||||||||||||||||||||
Sbjct: 96 attggatcccgccttgcatcaactgaatcgga 127
Score = 50.1 bits (25), Expect = 4e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 14 attcgcttggtgcaggtcgggaacc 38
|||||||||||||||||||||||||
Sbjct: 16 attcgcttggtgcaggtcgggaacc 40
>54375_pts-miR168b:pmrd
Length = 140
Score = 58.0 bits (29), Expect = 2e-09
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 75 cgaattggatcccgccttgcatcaactga 103
|||||||||||||||||||||||||||||
Sbjct: 112 cgaattggatcccgccttgcatcaactga 140
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 16 tcgcttggtgcaggtcgggaac 37
||||||||||||||||||||||
Sbjct: 1 tcgcttggtgcaggtcgggaac 22
>54374_pts-miR168a:pmrd
Length = 118
Score = 56.0 bits (28), Expect = 6e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 76 gaattggatcccgccttgcatcaactga 103
||||||||||||||||||||||||||||
Sbjct: 91 gaattggatcccgccttgcatcaactga 118
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 16 tcgcttggtgcaggtcgggaac 37
||||||||||||||||||||||
Sbjct: 1 tcgcttggtgcaggtcgggaac 22
>54366_ptr-miR168:pmrd
Length = 118
Score = 56.0 bits (28), Expect = 6e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 76 gaattggatcccgccttgcatcaactga 103
||||||||||||||||||||||||||||
Sbjct: 91 gaattggatcccgccttgcatcaactga 118
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 16 tcgcttggtgcaggtcgggaac 37
||||||||||||||||||||||
Sbjct: 1 tcgcttggtgcaggtcgggaac 22
>55000_zma-miR168b:pmrd
Length = 104
Score = 52.0 bits (26), Expect = 9e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 81 ggatcccgccttgcatcaactgaatcggag 110
||||||||||||||||||| ||||||||||
Sbjct: 63 ggatcccgccttgcatcaagtgaatcggag 92
>46959_ath-miR168m:pmrd
Length = 104
Score = 52.0 bits (26), Expect = 9e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 78 attggatcccgccttgcatcaactga 103
||||||||||||||||||||||||||
Sbjct: 79 attggatcccgccttgcatcaactga 104
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 16 tcgcttggtgcaggtcgggaacc 38
|||||||||||||||||||||||
Sbjct: 1 tcgcttggtgcaggtcgggaacc 23
>46958_ath-miR168b:pmrd
Length = 124
Score = 52.0 bits (26), Expect = 9e-08
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 4 gcggtctctaattcgcttggtgcaggtcgggaac 37
|||||||| ||||||||||||||||||||||||
Sbjct: 7 gcggtctcggattcgcttggtgcaggtcgggaac 40
>54999_zma-miR168a:pmrd
Length = 104
Score = 44.1 bits (22), Expect = 2e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 81 ggatcccgccttgcatcaactgaatcggag 110
||||||||||||||| ||| ||||||||||
Sbjct: 63 ggatcccgccttgcaccaagtgaatcggag 92
>54637_sof-miR168b:pmrd
Length = 103
Score = 44.1 bits (22), Expect = 2e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 81 ggatcccgccttgcatcaactgaatcggag 110
||||||||||||||| ||| ||||||||||
Sbjct: 62 ggatcccgccttgcaccaagtgaatcggag 91
>54636_sof-miR168a:pmrd
Length = 104
Score = 44.1 bits (22), Expect = 2e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 81 ggatcccgccttgcatcaactgaatcggag 110
||||||||||||||| ||| ||||||||||
Sbjct: 63 ggatcccgccttgcaccaagtgaatcggag 92
>48873_osa-miR168a:pmrd
Length = 87
Score = 44.1 bits (22), Expect = 2e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 81 ggatcccgccttgcatcaactgaatcggag 110
||||||||||||||| ||| ||||||||||
Sbjct: 55 ggatcccgccttgcaccaagtgaatcggag 84
>48872_osa-miR168a:pmrd
Length = 87
Score = 44.1 bits (22), Expect = 2e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 81 ggatcccgccttgcatcaactgaatcggag 110
||||||||||||||| ||| ||||||||||
Sbjct: 55 ggatcccgccttgcaccaagtgaatcggag 84
>48871_osa-miR168a:pmrd
Length = 87
Score = 44.1 bits (22), Expect = 2e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 81 ggatcccgccttgcatcaactgaatcggag 110
||||||||||||||| ||| ||||||||||
Sbjct: 55 ggatcccgccttgcaccaagtgaatcggag 84
>48649_hte-miR168:pmrd
Length = 140
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 16 tcgcttggtgcaggtcgggaac 37
||||||||||||||||||||||
Sbjct: 1 tcgcttggtgcaggtcgggaac 22
>48349_bna-miR168:pmrd
Length = 133
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 16 tcgcttggtgcaggtcgggaac 37
||||||||||||||||||||||
Sbjct: 18 tcgcttggtgcaggtcgggaac 39
>54665_stu-miR168:pmrd
Length = 133
Score = 42.1 bits (21), Expect = 9e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 79 ttggatcccgccttgcatcaactga 103
|||| ||||||||||||||||||||
Sbjct: 109 ttgggtcccgccttgcatcaactga 133
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 16 tcgcttggtgcaggtcggga 35
||||||||||||||||||||
Sbjct: 1 tcgcttggtgcaggtcggga 20
>54546_sly-miR168:pmrd
Length = 145
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 16 tcgcttggtgcaggtcggga 35
||||||||||||||||||||
Sbjct: 1 tcgcttggtgcaggtcggga 20
