miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>48549_gma-miR166b:pmrd
Length = 167
Score = 163 bits (82), Expect = 5e-41
Identities = 135/151 (89%), Gaps = 15/151 (9%)
Strand = Plus / Minus
Query: 24 aatgaagcctggtccgagaatcattttttctgtgtgtgtgttaagagggtaaatttccat 83
||||||||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct: 144 aatgaagcctggtccgagaatcatttttt-------tgtgt-aagagggtaaatttccat 93
Query: 84 tggaaactttcactgatctcagtact------ctcctcttcctccatgacctcgagccag 137
|||||||||||||||||||||||||| |||||| |||||||||||||||||||||
Sbjct: 92 tggaaactttcactgatctcagtactctactcctcctcctcctccatgacctcgagccag 33
Query: 138 acaacattcctctc-acctcacctttgcaag 167
|||||||||||||| ||||||||||||||||
Sbjct: 32 acaacattcctctcaacctcacctttgcaag 2
>54379_pvu-miR166:pmrd
Length = 144
Score = 71.9 bits (36), Expect = 1e-13
Identities = 36/36 (100%)
Strand = Plus / Minus
Query: 117 tcctccatgacctcgagccagacaacattcctctca 152
||||||||||||||||||||||||||||||||||||
Sbjct: 41 tcctccatgacctcgagccagacaacattcctctca 6
>52336_ptc-miRf10514-akr:pmrd
Length = 144
Score = 61.9 bits (31), Expect = 1e-10
Identities = 34/35 (97%)
Strand = Plus / Minus
Query: 118 cctccatgacctcgagccagacaacattcctctca 152
|||| ||||||||||||||||||||||||||||||
Sbjct: 37 cctcaatgacctcgagccagacaacattcctctca 3
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 24 aatgaagcctggtccgagaatcat 47
||||||||||||||||||||||||
Sbjct: 135 aatgaagcctggtccgagaatcat 112
>51641_ptc-miR166q:pmrd
Length = 151
Score = 61.9 bits (31), Expect = 1e-10
Identities = 34/35 (97%)
Strand = Plus / Minus
Query: 118 cctccatgacctcgagccagacaacattcctctca 152
|||| ||||||||||||||||||||||||||||||
Sbjct: 41 cctcaatgacctcgagccagacaacattcctctca 7
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 24 aatgaagcctggtccgagaatcat 47
||||||||||||||||||||||||
Sbjct: 139 aatgaagcctggtccgagaatcat 116
>46951_ath-miR166g:pmrd
Length = 122
Score = 56.0 bits (28), Expect = 9e-09
Identities = 31/32 (96%)
Strand = Plus / Minus
Query: 119 ctccatgacctcgagccagacaacattcctct 150
|||||||||||||||||| |||||||||||||
Sbjct: 46 ctccatgacctcgagccaaacaacattcctct 15
Score = 52.0 bits (26), Expect = 1e-07
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 24 aatgaagcctggtccgagaatcattt 49
||||||||||||||||||||||||||
Sbjct: 101 aatgaagcctggtccgagaatcattt 76
>48345_bna-miR166d:pmrd
Length = 128
Score = 54.0 bits (27), Expect = 3e-08
Identities = 30/31 (96%)
Strand = Plus / Minus
Query: 122 catgacctcgagccagacaacattcctctca 152
|||||||||||||||||||||| ||||||||
Sbjct: 48 catgacctcgagccagacaacagtcctctca 18
Score = 52.0 bits (26), Expect = 1e-07
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 24 aatgaagcctggtccgagaatcattt 49
||||||||||||||||||||||||||
Sbjct: 93 aatgaagcctggtccgagaatcattt 68
>46948_ath-miR166d:pmrd
Length = 113
Score = 54.0 bits (27), Expect = 3e-08
Identities = 30/31 (96%)
Strand = Plus / Minus
Query: 122 catgacctcgagccagacaacattcctctca 152
|||||||||||||||||||| ||||||||||
Sbjct: 34 catgacctcgagccagacaatattcctctca 4
Score = 52.0 bits (26), Expect = 1e-07
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 24 aatgaagcctggtccgagaatcattt 49
||||||||||||||||||||||||||
Sbjct: 103 aatgaagcctggtccgagaatcattt 78
>46947_ath-miR166c:pmrd
Length = 139
Score = 54.0 bits (27), Expect = 3e-08
Identities = 30/31 (96%)
Strand = Plus / Minus
Query: 122 catgacctcgagccagacaacattcctctca 152
|||||||||||||||||||||| ||||||||
Sbjct: 43 catgacctcgagccagacaacaatcctctca 13
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 24 aatgaagcctggtccgagaatcat 47
||||||||||||||||||||||||
Sbjct: 119 aatgaagcctggtccgagaatcat 96
>54544_sly-miR166b:pmrd
Length = 201
Score = 50.1 bits (25), Expect = 5e-07
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 124 tgacctcgagccagacaacattcctctca 152
|||||||||||||||||||||||| ||||
Sbjct: 62 tgacctcgagccagacaacattcccctca 34
>51625_ptc-miR166a:pmrd
Length = 164
Score = 50.1 bits (25), Expect = 5e-07
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 124 tgacctcgagccagacaacattcctctca 152
|||||||||||||||||||||||| ||||
Sbjct: 36 tgacctcgagccagacaacattcccctca 8
>48789_nsy-miR166:pmrd
Length = 187
Score = 50.1 bits (25), Expect = 5e-07
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 124 tgacctcgagccagacaacattcctctca 152
|||||||||||||||||||||||| ||||
Sbjct: 29 tgacctcgagccagacaacattcccctca 1
>54972_zma-miR166p:pmrd
Length = 95
Score = 46.1 bits (23), Expect = 8e-06
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 126 acctcgagccagacaacattcctctca 152
|||||||||||||||||||||| ||||
Sbjct: 28 acctcgagccagacaacattcccctca 2
>51640_ptc-miR166p:pmrd
Length = 146
Score = 46.1 bits (23), Expect = 8e-06
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 118 cctccatgacctcgagccagacaacattcctctca 152
||||||||||||||| ||||||| | |||||||||
Sbjct: 41 cctccatgacctcgacccagacagcgttcctctca 7
Score = 44.1 bits (22), Expect = 3e-05
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 24 aatgaagcctggtccgagaatcattt 49
|||| |||||||||||||||||||||
Sbjct: 134 aatggagcctggtccgagaatcattt 109
>48847_osa-miR166d:pmrd
Length = 125
Score = 46.1 bits (23), Expect = 8e-06
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 126 acctcgagccagacaacattcctctca 152
|||||||||||||||||||||| ||||
Sbjct: 42 acctcgagccagacaacattcccctca 16
>54970_zma-miR166n:pmrd
Length = 96
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 126 acctcgagccagacaacattcc 147
||||||||||||||||||||||
Sbjct: 26 acctcgagccagacaacattcc 5
>54961_zma-miR166e:pmrd
Length = 87
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 126 acctcgagccagacaacattcc 147
||||||||||||||||||||||
Sbjct: 24 acctcgagccagacaacattcc 3
>54959_zma-miR166c:pmrd
Length = 92
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 126 acctcgagccagacaacattcc 147
||||||||||||||||||||||
Sbjct: 24 acctcgagccagacaacattcc 3
>54793_vvi-miR166e:pmrd
Length = 166
Score = 44.1 bits (22), Expect = 3e-05
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 127 cctcgagccagacaacattcctctca 152
||||||||||||||||||||| ||||
Sbjct: 32 cctcgagccagacaacattcccctca 7
>54791_vvi-miR166c:pmrd
Length = 160
Score = 44.1 bits (22), Expect = 3e-05
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 127 cctcgagccagacaacattcctctca 152
||||||||||||||||||||| ||||
Sbjct: 32 cctcgagccagacaacattcccctca 7
>54419_sbi-miR166d:pmrd
Length = 87
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 126 acctcgagccagacaacattcc 147
||||||||||||||||||||||
Sbjct: 24 acctcgagccagacaacattcc 3
>52289_ptc-miRf10467-akr:pmrd
Length = 123
Score = 44.1 bits (22), Expect = 3e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 127 cctcgagccagacaacattcctctca 152
||||||||||||||||||||| ||||
Sbjct: 97 cctcgagccagacaacattcccctca 122
>52014_ptc-miRf10192-akr:pmrd
Length = 132
Score = 44.1 bits (22), Expect = 3e-05
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 127 cctcgagccagacaacattcctctca 152
||||||||||||||||||||| ||||
Sbjct: 27 cctcgagccagacaacattcccctca 2
>51635_ptc-miR166k:pmrd
Length = 143
Score = 44.1 bits (22), Expect = 3e-05
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 127 cctcgagccagacaacattcctctca 152
||||||||||||||||||||| ||||
Sbjct: 33 cctcgagccagacaacattcccctca 8
>51634_ptc-miR166j:pmrd
Length = 143
Score = 44.1 bits (22), Expect = 3e-05
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 127 cctcgagccagacaacattcctctca 152
||||||||||||||||||||| ||||
Sbjct: 33 cctcgagccagacaacattcccctca 8
>51627_ptc-miR166c:pmrd
Length = 134
Score = 44.1 bits (22), Expect = 3e-05
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 127 cctcgagccagacaacattcctctca 152
||||||||||||||||||||| ||||
Sbjct: 33 cctcgagccagacaacattcccctca 8
>48548_gma-miR166a:pmrd
Length = 146
Score = 44.1 bits (22), Expect = 3e-05
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 127 cctcgagccagacaacattcctctca 152
||||||||||||||||||||| ||||
Sbjct: 43 cctcgagccagacaacattcccctca 18
>48427_cpt-miR166:pmrd
Length = 160
Score = 44.1 bits (22), Expect = 3e-05
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 127 cctcgagccagacaacattcctctca 152
||||||||||||||||||||| ||||
Sbjct: 32 cctcgagccagacaacattcccctca 7
>46870_aqc-miR166e:pmrd
Length = 147
Score = 44.1 bits (22), Expect = 3e-05
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 127 cctcgagccagacaacattcctctca 152
|||||| |||||||||||||||||||
Sbjct: 27 cctcgaaccagacaacattcctctca 2
>54973_zma-miR166q:pmrd
Length = 91
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 126 acctcgagccagacaacattc 146
|||||||||||||||||||||
Sbjct: 26 acctcgagccagacaacattc 6
>48714_mtr-miR166d:pmrd
Length = 97
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 127 cctcgagccagacaacattcc 147
|||||||||||||||||||||
Sbjct: 23 cctcgagccagacaacattcc 3
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 24 aatgaagcctggtccgagaat 44
|||||||||||||||||||||
Sbjct: 93 aatgaagcctggtccgagaat 73
>51558_pta-miR166a:pmrd
Length = 94
Score = 40.1 bits (20), Expect = 5e-04
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 129 tcgagccagacaacattcctctca 152
||||||||||||||||||| ||||
Sbjct: 29 tcgagccagacaacattcccctca 6
>48552_gma-miR166q:pmrd
Length = 156
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 24 aatgaagcctggtccgagaa 43
||||||||||||||||||||
Sbjct: 152 aatgaagcctggtccgagaa 133
