miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>49071_osa-miR818e:pmrd
          Length = 225

 Score = 50.1 bits (25), Expect = 8e-07
 Identities = 28/29 (96%)
 Strand = Plus / Minus

                                        
Query: 59  tttgaccactcgttttattcaaaatattt 87
           |||||||||||||||||||||||| ||||
Sbjct: 180 tttgaccactcgttttattcaaaaaattt 152




>49027_osa-miR806d:pmrd
          Length = 271

 Score = 44.1 bits (22), Expect = 5e-05
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                        
Query: 59 tttgaccactcgttttattcaaaatattta 88
          |||||||| ||||||||||||||| |||||
Sbjct: 65 tttgaccattcgttttattcaaaaaattta 94




>49422_osa-miRf10207-akr:pmrd
          Length = 165

 Score = 40.1 bits (20), Expect = 8e-04
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 59  tttgaccactcgttttattcaaaa 82
           ||||||||||||| ||||||||||
Sbjct: 152 tttgaccactcgtcttattcaaaa 129




>49190_osa-miR1884b:pmrd
          Length = 221

 Score = 40.1 bits (20), Expect = 8e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 196 tcaacggtgtcatatattta 215
           ||||||||||||||||||||
Sbjct: 194 tcaacggtgtcatatattta 213