miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>54509_sbi-miR437m:pmrd
Length = 174
Score = 180 bits (91), Expect = 3e-46
Identities = 150/167 (89%), Gaps = 2/167 (1%)
Strand = Plus / Minus
Query: 9 ctaaatcagacttctctaactttttgaccaagtttttagaaaattatattaacatctact 68
|||| ||| |||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 174 ctaagtcaaacttctctaactttttgaccaagtttttagaaaattatattaacatatact 115
Query: 69 agtttagataaacagactatcggggcattttatggaaaatttaaggaacctagatttgat 128
|||||| ||||||| |||| | | ||||| |||||||||||| ||| ||| |||||||
Sbjct: 114 agttta-ataaacacactaccaagacatttcgtggaaaatttaatgaagcta-atttgat 57
Query: 129 attgtagatgttggtgcatttttctagtaacttggttaaaggtagat 175
||| |||||||||||||||||||||||||||||| |||||| |||||
Sbjct: 56 attctagatgttggtgcatttttctagtaacttgtttaaagttagat 10
>54508_sbi-miR437l:pmrd
Length = 170
Score = 63.9 bits (32), Expect = 4e-11
Identities = 47/51 (92%), Gaps = 2/51 (3%)
Strand = Plus / Minus
Query: 18 acttctctaactttttgaccaagtttttagaaaattatattaacatctact 68
|||||||||||||| | |||||||||||||||| ||||||||||||||||
Sbjct: 163 acttctctaacttt--ggccaagtttttagaaaaatatattaacatctact 115
>54518_sbi-miR437v:pmrd
Length = 114
Score = 58.0 bits (29), Expect = 3e-09
Identities = 38/41 (92%)
Strand = Plus / Plus
Query: 123 tttgatattgtagatgttggtgcatttttctagtaacttgg 163
||||||||||||||||||| |||||||||||| |||||||
Sbjct: 51 tttgatattgtagatgttgatgcatttttctataaacttgg 91
>54505_sbi-miR437i:pmrd
Length = 170
Score = 54.0 bits (27), Expect = 4e-08
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 31 tttgaccaagtttttagaaaattatattaacatct 65
||||||||||||| |||||| ||||||||||||||
Sbjct: 17 tttgaccaagtttctagaaagttatattaacatct 51
>54500_sbi-miR437b:pmrd
Length = 171
Score = 50.1 bits (25), Expect = 6e-07
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 134 agatgttggtgcatttttctagtaacttggttaaaggtaga 174
||||||||||||||||||||| |||||||| |||| ||||
Sbjct: 119 agatgttggtgcatttttctataaacttggtcaaagttaga 159
>48988_osa-miR437:pmrd
Length = 213
Score = 50.1 bits (25), Expect = 6e-07
Identities = 43/48 (89%), Gaps = 2/48 (4%)
Strand = Plus / Minus
Query: 4 ttgtcctaaatcagacttctctaactttttgaccaagtttttagaaaa 51
||||||||| ||| ||||||||||| ||||||||||||| |||||||
Sbjct: 182 ttgtcctaagtcaaacttctctaac--tttgaccaagtttatagaaaa 137
>48987_osa-miR437:pmrd
Length = 213
Score = 50.1 bits (25), Expect = 6e-07
Identities = 43/48 (89%), Gaps = 2/48 (4%)
Strand = Plus / Minus
Query: 4 ttgtcctaaatcagacttctctaactttttgaccaagtttttagaaaa 51
||||||||| ||| ||||||||||| ||||||||||||| |||||||
Sbjct: 182 ttgtcctaagtcaaacttctctaac--tttgaccaagtttatagaaaa 137
>48986_osa-miR437:pmrd
Length = 213
Score = 50.1 bits (25), Expect = 6e-07
Identities = 43/48 (89%), Gaps = 2/48 (4%)
Strand = Plus / Minus
Query: 4 ttgtcctaaatcagacttctctaactttttgaccaagtttttagaaaa 51
||||||||| ||| ||||||||||| ||||||||||||| |||||||
Sbjct: 182 ttgtcctaagtcaaacttctctaac--tttgaccaagtttatagaaaa 137
>55109_zma-miR437c:pmrd
Length = 177
Score = 48.1 bits (24), Expect = 3e-06
Identities = 48/55 (87%), Gaps = 2/55 (3%)
Strand = Plus / Minus
Query: 18 acttctctaactttttgaccaagtttttagaaaattatattaacatctactagtt 72
||||||||||| |||||||||| |||| ||||| ||||||| ||||||| ||||
Sbjct: 172 acttctctaac--tttgaccaagctttttgaaaaatatattagcatctacaagtt 120
>54651_sof-miR437:pmrd
Length = 149
Score = 48.1 bits (24), Expect = 3e-06
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 123 tttgatattgtagatgttggtgcatttttcta 154
||||||||| ||||| ||||||||||||||||
Sbjct: 65 tttgatattctagattttggtgcatttttcta 34
Score = 40.1 bits (20), Expect = 6e-04
Identities = 45/51 (88%), Gaps = 3/51 (5%)
Strand = Plus / Minus
Query: 18 acttctctaactttttgaccaagtttttag-aaaattatattaacatctac 67
|||||||||||||| || ||||||||||| |||| ||||||| |||||||
Sbjct: 141 acttctctaacttt--gatcaagtttttagaaaaaatatattatcatctac 93
>54507_sbi-miR437k:pmrd
Length = 172
Score = 48.1 bits (24), Expect = 3e-06
Identities = 39/43 (90%), Gaps = 2/43 (4%)
Strand = Plus / Minus
Query: 9 ctaaatcagacttctctaactttttgaccaagtttttagaaaa 51
|||| ||| |||||||||||||| ||||||||||||||||||
Sbjct: 172 ctaagtcaaacttctctaacttt--gaccaagtttttagaaaa 132
>54504_sbi-miR437g:pmrd
Length = 176
Score = 48.1 bits (24), Expect = 3e-06
Identities = 45/52 (86%)
Strand = Plus / Plus
Query: 123 tttgatattgtagatgttggtgcatttttctagtaacttggttaaaggtaga 174
|||||| |||||||||||| |||| ||||||| |||||||| |||| ||||
Sbjct: 111 tttgatgttgtagatgttgatgcaattttctataaacttggtcaaagttaga 162
Score = 48.1 bits (24), Expect = 3e-06
Identities = 51/59 (86%), Gaps = 2/59 (3%)
Strand = Plus / Minus
Query: 9 ctaaatcagacttctctaactttttgaccaagtttttagaaaattatattaacatctac 67
|||| ||| |||||||||||||| |||||||||| ||||||||| || |||||||||
Sbjct: 176 ctaagtcaaacttctctaacttt--gaccaagtttatagaaaattgcatcaacatctac 120
>54501_sbi-miR437d:pmrd
Length = 136
Score = 44.1 bits (22), Expect = 4e-05
Identities = 43/50 (86%)
Strand = Plus / Plus
Query: 125 tgatattgtagatgttggtgcatttttctagtaacttggttaaaggtaga 174
|||| ||||| || |||||||||||| ||| ||||||||||||| ||||
Sbjct: 73 tgatgttgtaaatattggtgcattttcctataaacttggttaaagttaga 122
>54516_sbi-miR437t:pmrd
Length = 170
Score = 42.1 bits (21), Expect = 2e-04
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 134 agatgttggtgcatttttctagtaacttggttaaaggtaga 174
||||||| ||||||||||||| |||||||| |||| ||||
Sbjct: 118 agatgtttgtgcatttttctataaacttggtcaaagttaga 158
>54511_sbi-miR437o:pmrd
Length = 175
Score = 42.1 bits (21), Expect = 2e-04
Identities = 30/33 (90%)
Strand = Plus / Minus
Query: 122 atttgatattgtagatgttggtgcatttttcta 154
||||||| ||||||| | |||||||||||||||
Sbjct: 62 atttgatgttgtagaggatggtgcatttttcta 30
>54502_sbi-miR437e:pmrd
Length = 101
Score = 42.1 bits (21), Expect = 2e-04
Identities = 36/40 (90%), Gaps = 2/40 (5%)
Strand = Plus / Minus
Query: 18 acttctctaactttttgaccaagtttttagaaaattatat 57
|||||||||||||| ||||||||||| |||||| |||||
Sbjct: 94 acttctctaacttt--gaccaagttttcagaaaaatatat 57
>54510_sbi-miR437n:pmrd
Length = 182
Score = 40.1 bits (20), Expect = 6e-04
Identities = 41/47 (87%), Gaps = 2/47 (4%)
Strand = Plus / Minus
Query: 18 acttctctaactttttgaccaagtttttagaaaattatattaacatc 64
||||||||||| ||| ||||||||| ||||||| |||| |||||||
Sbjct: 173 acttctctaac--tttaaccaagtttgtagaaaaatatactaacatc 129
>54506_sbi-miR437j:pmrd
Length = 172
Score = 40.1 bits (20), Expect = 6e-04
Identities = 32/35 (91%), Gaps = 2/35 (5%)
Strand = Plus / Plus
Query: 18 acttctctaactttttgaccaagtttttagaaaat 52
|||||||||||||| |||||||||| ||||||||
Sbjct: 6 acttctctaacttt--gaccaagtttatagaaaat 38
>54503_sbi-miR437f:pmrd
Length = 174
Score = 40.1 bits (20), Expect = 6e-04
Identities = 38/43 (88%), Gaps = 2/43 (4%)
Strand = Plus / Minus
Query: 9 ctaaatcagacttctctaactttttgaccaagtttttagaaaa 51
|||| ||| |||||||||||||| |||||||||| |||||||
Sbjct: 174 ctaagtcaaacttctctaacttt--gaccaagtttatagaaaa 134
