miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>55065_zma-miR394b:pmrd
Length = 122
Score = 200 bits (101), Expect = 2e-52
Identities = 115/122 (94%)
Strand = Plus / Plus
Query: 23 tggcgcttactgagagttccttggcattctgtccacctcccttcttgacgatcttgcaga 82
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tggcgcttactgagagttccttggcattctgtccacctcccttcttgacgatcttgcaga 60
Query: 83 aagtttgcnnnnnnngtttgtttggaggtgggcatactgccaatggagctgcgtaggcct 142
|||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 aagtttgctttttttgtttgtttggaggtgggcatactgccaatggagctgcgtaggcct 120
Query: 143 cc 144
||
Sbjct: 121 cc 122
>55064_zma-miR394a:pmrd
Length = 126
Score = 89.7 bits (45), Expect = 6e-19
Identities = 107/128 (83%), Gaps = 9/128 (7%)
Strand = Plus / Plus
Query: 24 ggcgcttactga-gagttccttggcattctgtccacctcccttcttgacgatcttgcaga 82
|||||||||||| ||||||||||||||||||||||||||| ||| | ||||||||||||
Sbjct: 1 ggcgcttactgaagagttccttggcattctgtccacctcc--tctcgccgatcttgcaga 58
Query: 83 aagtttgcnnnnnnng------tttgtttggaggtgggcatactgccaatggagctgcgt 136
|||||| | | ||| ||||||||||||||||||||||||||||||| ||
Sbjct: 59 aagtttaccagttctgttgcattttttttggaggtgggcatactgccaatggagctgtgt 118
Query: 137 aggcctcc 144
||||||||
Sbjct: 119 aggcctcc 126
>54472_sbi-miR394b:pmrd
Length = 111
Score = 65.9 bits (33), Expect = 9e-12
Identities = 33/33 (100%)
Strand = Plus / Plus
Query: 30 tactgagagttccttggcattctgtccacctcc 62
|||||||||||||||||||||||||||||||||
Sbjct: 8 tactgagagttccttggcattctgtccacctcc 40
Score = 48.1 bits (24), Expect = 2e-06
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 103 tttggaggtgggcatactgccaatggagctgcgtaggc 140
||||||||||| |||||| ||||||||||| ||||||
Sbjct: 70 tttggaggtgganatactgncaatggagctgtgtaggc 107
>54471_sbi-miR394a:pmrd
Length = 110
Score = 65.9 bits (33), Expect = 9e-12
Identities = 33/33 (100%)
Strand = Plus / Plus
Query: 30 tactgagagttccttggcattctgtccacctcc 62
|||||||||||||||||||||||||||||||||
Sbjct: 8 tactgagagttccttggcattctgtccacctcc 40
Score = 65.9 bits (33), Expect = 9e-12
Identities = 39/41 (95%)
Strand = Plus / Plus
Query: 103 tttggaggtgggcatactgccaatggagctgcgtaggcctc 143
||||||||||| ||||||||||||||||||| |||||||||
Sbjct: 69 tttggaggtggacatactgccaatggagctgtgtaggcctc 109
>48920_osa-miR394:pmrd
Length = 110
Score = 63.9 bits (32), Expect = 4e-11
Identities = 35/36 (97%)
Strand = Plus / Plus
Query: 104 ttggaggtgggcatactgccaatggagctgcgtagg 139
|||||||||||||||||||||||||||||| |||||
Sbjct: 75 ttggaggtgggcatactgccaatggagctgtgtagg 110
Score = 58.0 bits (29), Expect = 2e-09
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 30 tactgagagttccttggcattctgtccacctcc 62
|||||||||||| ||||||||||||||||||||
Sbjct: 1 tactgagagttctttggcattctgtccacctcc 33
>54852_vvi-miR394b:pmrd
Length = 93
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 43 ttggcattctgtccacctccc 63
|||||||||||||||||||||
Sbjct: 11 ttggcattctgtccacctccc 31
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 105 tggaggtgggcatactgccaa 125
|||||||||||||||||||||
Sbjct: 61 tggaggtgggcatactgccaa 81
>51918_ptc-miRf10096-akr:pmrd
Length = 121
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 105 tggaggtgggcatactgccaa 125
|||||||||||||||||||||
Sbjct: 76 tggaggtgggcatactgccaa 96
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 43 ttggcattctgtccacctcc 62
||||||||||||||||||||
Sbjct: 25 ttggcattctgtccacctcc 44
>47001_ath-miR394b:pmrd
Length = 121
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 106 ggaggtgggcatactgccaat 126
|||||||||||||||||||||
Sbjct: 88 ggaggtgggcatactgccaat 108
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 43 ttggcattctgtccacctcc 62
||||||||||||||||||||
Sbjct: 14 ttggcattctgtccacctcc 33
>54853_vvi-miR394c:pmrd
Length = 102
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 43 ttggcattctgtccacctcc 62
||||||||||||||||||||
Sbjct: 11 ttggcattctgtccacctcc 30
>54851_vvi-miR394a:pmrd
Length = 89
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 43 ttggcattctgtccacctcc 62
||||||||||||||||||||
Sbjct: 11 ttggcattctgtccacctcc 30
>48502_ghr-miR394:pmrd
Length = 97
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 43 ttggcattctgtccacctcc 62
||||||||||||||||||||
Sbjct: 1 ttggcattctgtccacctcc 20
>47000_ath-miR394a:pmrd
Length = 117
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 43 ttggcattctgtccacctcc 62
||||||||||||||||||||
Sbjct: 14 ttggcattctgtccacctcc 33
