miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>55064_zma-miR394a:pmrd
Length = 126
Score = 172 bits (87), Expect = 5e-44
Identities = 117/129 (90%), Gaps = 3/129 (2%)
Strand = Plus / Plus
Query: 13 ggcgcttactgaagagttccttggcattctgtccacctcctctcgccgatcttgcagaaa 72
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ggcgcttactgaagagttccttggcattctgtccacctcctctcgccgatcttgcagaaa 60
Query: 73 gtttaccagttctgttgcannnnnnnnnnnggaggtgggcatactgccaatggagctgtg 132
||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 61 gtttaccagttctgttgca---ttttttttggaggtgggcatactgccaatggagctgtg 117
Query: 133 caggcctcc 141
||||||||
Sbjct: 118 taggcctcc 126
>55065_zma-miR394b:pmrd
Length = 122
Score = 77.8 bits (39), Expect = 2e-15
Identities = 61/66 (92%), Gaps = 3/66 (4%)
Strand = Plus / Plus
Query: 13 ggcgcttactgaagagttccttggcattctgtccacctcc--tctcgccgatcttgcaga 70
|||||||||||| ||||||||||||||||||||||||||| ||| | ||||||||||||
Sbjct: 2 ggcgcttactga-gagttccttggcattctgtccacctcccttcttgacgatcttgcaga 60
Query: 71 aagttt 76
||||||
Sbjct: 61 aagttt 66
Score = 61.9 bits (31), Expect = 1e-10
Identities = 37/39 (94%)
Strand = Plus / Plus
Query: 103 ggaggtgggcatactgccaatggagctgtgcaggcctcc 141
|||||||||||||||||||||||||||| | ||||||||
Sbjct: 84 ggaggtgggcatactgccaatggagctgcgtaggcctcc 122
>54471_sbi-miR394a:pmrd
Length = 110
Score = 60.0 bits (30), Expect = 5e-10
Identities = 36/38 (94%)
Strand = Plus / Plus
Query: 103 ggaggtgggcatactgccaatggagctgtgcaggcctc 140
|||||||| ||||||||||||||||||||| |||||||
Sbjct: 72 ggaggtggacatactgccaatggagctgtgtaggcctc 109
Score = 58.0 bits (29), Expect = 2e-09
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 25 agagttccttggcattctgtccacctcct 53
|||||||||||||||||||||||||||||
Sbjct: 13 agagttccttggcattctgtccacctcct 41
>48920_osa-miR394:pmrd
Length = 110
Score = 60.0 bits (30), Expect = 5e-10
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 103 ggaggtgggcatactgccaatggagctgtg 132
||||||||||||||||||||||||||||||
Sbjct: 77 ggaggtgggcatactgccaatggagctgtg 106
Score = 50.1 bits (25), Expect = 5e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 25 agagttccttggcattctgtccacctcct 53
||||||| |||||||||||||||||||||
Sbjct: 6 agagttctttggcattctgtccacctcct 34
>54472_sbi-miR394b:pmrd
Length = 111
Score = 58.0 bits (29), Expect = 2e-09
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 25 agagttccttggcattctgtccacctcct 53
|||||||||||||||||||||||||||||
Sbjct: 13 agagttccttggcattctgtccacctcct 41
Score = 42.1 bits (21), Expect = 1e-04
Identities = 31/35 (88%)
Strand = Plus / Plus
Query: 103 ggaggtgggcatactgccaatggagctgtgcaggc 137
|||||||| |||||| ||||||||||||| ||||
Sbjct: 73 ggaggtgganatactgncaatggagctgtgtaggc 107
>47001_ath-miR394b:pmrd
Length = 121
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 33 ttggcattctgtccacctcctctc 56
||||||||||||||||||||||||
Sbjct: 14 ttggcattctgtccacctcctctc 37
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 103 ggaggtgggcatactgccaat 123
|||||||||||||||||||||
Sbjct: 88 ggaggtgggcatactgccaat 108
>51918_ptc-miRf10096-akr:pmrd
Length = 121
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 33 ttggcattctgtccacctcct 53
|||||||||||||||||||||
Sbjct: 25 ttggcattctgtccacctcct 45
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 103 ggaggtgggcatactgccaa 122
||||||||||||||||||||
Sbjct: 77 ggaggtgggcatactgccaa 96
>47000_ath-miR394a:pmrd
Length = 117
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 33 ttggcattctgtccacctcct 53
|||||||||||||||||||||
Sbjct: 14 ttggcattctgtccacctcct 34
>54853_vvi-miR394c:pmrd
Length = 102
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 33 ttggcattctgtccacctcc 52
||||||||||||||||||||
Sbjct: 11 ttggcattctgtccacctcc 30
>54852_vvi-miR394b:pmrd
Length = 93
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 33 ttggcattctgtccacctcc 52
||||||||||||||||||||
Sbjct: 11 ttggcattctgtccacctcc 30
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 103 ggaggtgggcatactgccaa 122
||||||||||||||||||||
Sbjct: 62 ggaggtgggcatactgccaa 81
>54851_vvi-miR394a:pmrd
Length = 89
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 33 ttggcattctgtccacctcc 52
||||||||||||||||||||
Sbjct: 11 ttggcattctgtccacctcc 30
>48502_ghr-miR394:pmrd
Length = 97
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 33 ttggcattctgtccacctcc 52
||||||||||||||||||||
Sbjct: 1 ttggcattctgtccacctcc 20
