miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>54932_zma-miR159c:pmrd
Length = 217
Score = 398 bits (201), Expect = e-112
Identities = 201/201 (100%)
Strand = Plus / Plus
Query: 3 taagaaaggcgatcgaagagctcccttcgatccaatccaggaggggaagtggtcggttgc 62
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6 taagaaaggcgatcgaagagctcccttcgatccaatccaggaggggaagtggtcggttgc 65
Query: 63 agctgccggttcatggatacctctctggtgcagcaatggccgctgctcacctctgcactt 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66 agctgccggttcatggatacctctctggtgcagcaatggccgctgctcacctctgcactt 125
Query: 123 gcatgggtgtgcatgacccgggagatgagcccgccatcatctttccctcgtgcttggatt 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 126 gcatgggtgtgcatgacccgggagatgagcccgccatcatctttccctcgtgcttggatt 185
Query: 183 gaagggagctcctctctgtct 203
|||||||||||||||||||||
Sbjct: 186 gaagggagctcctctctgtct 206
>54936_zma-miR159g:pmrd
Length = 180
Score = 357 bits (180), Expect = 2e-99
Identities = 180/180 (100%)
Strand = Plus / Plus
Query: 17 gaagagctcccttcgatccaatccaggaggggaagtggtcggttgcagctgccggttcat 76
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gaagagctcccttcgatccaatccaggaggggaagtggtcggttgcagctgccggttcat 60
Query: 77 ggatacctctctggtgcagcaatggccgctgctcacctctgcacttgcatgggtgtgcat 136
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ggatacctctctggtgcagcaatggccgctgctcacctctgcacttgcatgggtgtgcat 120
Query: 137 gacccgggagatgagcccgccatcatctttccctcgtgcttggattgaagggagctcctc 196
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 gacccgggagatgagcccgccatcatctttccctcgtgcttggattgaagggagctcctc 180
>55054_zma-miR319m:pmrd
Length = 178
Score = 353 bits (178), Expect = 3e-98
Identities = 178/178 (100%)
Strand = Plus / Plus
Query: 18 aagagctcccttcgatccaatccaggaggggaagtggtcggttgcagctgccggttcatg 77
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 aagagctcccttcgatccaatccaggaggggaagtggtcggttgcagctgccggttcatg 60
Query: 78 gatacctctctggtgcagcaatggccgctgctcacctctgcacttgcatgggtgtgcatg 137
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 gatacctctctggtgcagcaatggccgctgctcacctctgcacttgcatgggtgtgcatg 120
Query: 138 acccgggagatgagcccgccatcatctttccctcgtgcttggattgaagggagctcct 195
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 acccgggagatgagcccgccatcatctttccctcgtgcttggattgaagggagctcct 178
>54935_zma-miR159f:pmrd
Length = 181
Score = 319 bits (161), Expect = 5e-88
Identities = 177/181 (97%), Gaps = 1/181 (0%)
Strand = Plus / Plus
Query: 17 gaagagctcccttcgatccaatccagg-aggggaagtggtcggttgcagctgccggttca 75
||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||
Sbjct: 1 gaagagctcccttcgatccaatccagggaggggaagtgttcggttgcagctgccggttca 60
Query: 76 tggatacctctctggtgcagcaatggccgctgctcacctctgcacttgcatgggtgtgca 135
||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 61 tggatacttctctggtgcagcaatggccgcagctcacctctgcacttgcatgggtgtgca 120
Query: 136 tgacccgggagatgagcccgccatcatctttccctcgtgcttggattgaagggagctcct 195
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 tgacccgggagatgagcccgccatcatctttccctcgtgcttggattgaagggagctcct 180
Query: 196 c 196
|
Sbjct: 181 c 181
>54630_sof-miR159c:pmrd
Length = 238
Score = 295 bits (149), Expect = 7e-81
Identities = 185/196 (94%), Gaps = 2/196 (1%)
Strand = Plus / Plus
Query: 4 aagaaaggcgatcgaagagctcccttcgatccaatccaggaggggaagtggtcggttgca 63
|||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 30 aagaaaagtgatcgaagagctcccttcgatccaatccaggaggggaagtggtcggttgca 89
Query: 64 gctgccggttcatggatacctctctggtgcagcaatggccgctgctcacctctgcacttg 123
||||||||||||||||| ||||||||||||||||||| | ||||||| |||||||||
Sbjct: 90 gctgccggttcatggatgcctctctggtgcagcaatgactaatgctcac--ctgcacttg 147
Query: 124 catgggtgtgcatgacccgggagatgagcccgccatcatctttccctcgtgcttggattg 183
||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||
Sbjct: 148 catgggtgtgcatgacccgggagatgaacccaccatcatctttccctcgtgcttggattg 207
Query: 184 aagggagctcctctct 199
||||||||||||||||
Sbjct: 208 aagggagctcctctct 223
>54403_sbi-miR159b:pmrd
Length = 253
Score = 295 bits (149), Expect = 7e-81
Identities = 185/196 (94%), Gaps = 2/196 (1%)
Strand = Plus / Plus
Query: 4 aagaaaggcgatcgaagagctcccttcgatccaatccaggaggggaagtggtcggttgca 63
|||||| |||| | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45 aagaaaagcgaacaaagagctcccttcgatccaatccaggaggggaagtggtcggttgca 104
Query: 64 gctgccggttcatggatacctctctggtgcagcaatggccgctgctcacctctgcacttg 123
||||||||||||||||| ||||||||||||||||||| | | ||||||| |||||||||
Sbjct: 105 gctgccggttcatggatgcctctctggtgcagcaatgactgatgctcac--ctgcacttg 162
Query: 124 catgggtgtgcatgacccgggagatgagcccgccatcatctttccctcgtgcttggattg 183
||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||
Sbjct: 163 catgggtgtgcatgacccgggagatgaacccaccatcatctttccctcgtgcttggattg 222
Query: 184 aagggagctcctctct 199
||||||||||||||||
Sbjct: 223 aagggagctcctctct 238
>54933_zma-miR159d:pmrd
Length = 217
Score = 278 bits (140), Expect = 2e-75
Identities = 179/190 (94%), Gaps = 4/190 (2%)
Strand = Plus / Plus
Query: 12 cgatcgaagagctcccttcgatccaatccaggaggggaagtggtcggttgcagctgccgg 71
|||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||
Sbjct: 15 cgatcgaagagctcccttcgatccaatccaggagggaaagtggtcggctgcagctgccgg 74
Query: 72 ttcatggatacctctctggtgcagcaatggcc--gctgctcacctctgcacttgcatggg 129
|||||||||||||||||||||||||||||||| | ||||||| |||||||||||||||
Sbjct: 75 ttcatggatacctctctggtgcagcaatggccgagatgctcac--ctgcacttgcatggg 132
Query: 130 tgtgcatgacccgggagatgagcccgccatcatctttccctcgtgcttggattgaaggga 189
|||||||||||||||||| || || ||||||||||||||||||||||||||||||||||
Sbjct: 133 tgtgcatgacccgggagacgaaccgaccatcatctttccctcgtgcttggattgaaggga 192
Query: 190 gctcctctct 199
||||||||||
Sbjct: 193 gctcctctct 202
>54643_sof-miR319b:pmrd
Length = 176
Score = 276 bits (139), Expect = 6e-75
Identities = 169/178 (94%), Gaps = 2/178 (1%)
Strand = Plus / Plus
Query: 18 aagagctcccttcgatccaatccaggaggggaagtggtcggttgcagctgccggttcatg 77
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 aagagctcccttcgatccaatccaggaggggaagtggtcggttgcagctgccggttcatg 60
Query: 78 gatacctctctggtgcagcaatggccgctgctcacctctgcacttgcatgggtgtgcatg 137
||| ||||||||||||||||||| | ||||||| |||||||||||||||||||||||
Sbjct: 61 gatgcctctctggtgcagcaatgactaatgctcac--ctgcacttgcatgggtgtgcatg 118
Query: 138 acccgggagatgagcccgccatcatctttccctcgtgcttggattgaagggagctcct 195
||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 119 acccgggagatgaacccaccatcatctttccctcgtgcttggattgaagggagctcct 176
>48824_osa-miR159f:pmrd
Length = 188
Score = 109 bits (55), Expect = 9e-25
Identities = 64/67 (95%)
Strand = Plus / Plus
Query: 20 gagctcccttcgatccaatccaggaggggaagtggtcggttgcagctgccggttcatgga 79
|||||||||||||||||||||||||| ||||||||| || ||||||||||||||||||||
Sbjct: 13 gagctcccttcgatccaatccaggagaggaagtggtaggatgcagctgccggttcatgga 72
Query: 80 tacctct 86
|||||||
Sbjct: 73 tacctct 79
>48823_osa-miR159e:pmrd
Length = 191
Score = 93.7 bits (47), Expect = 5e-20
Identities = 66/71 (92%), Gaps = 1/71 (1%)
Strand = Plus / Plus
Query: 17 gaagagctccctt-cgatccaatccaggaggggaagtggtcggttgcagctgccggttca 75
||||||||||||| ||||||||| |||||| ||||||||| || ||||||||||||||||
Sbjct: 10 gaagagctccctttcgatccaattcaggagaggaagtggtaggatgcagctgccggttca 69
Query: 76 tggatacctct 86
|||||||||||
Sbjct: 70 tggatacctct 80
>48822_osa-miR159d:pmrd
Length = 189
Score = 93.7 bits (47), Expect = 5e-20
Identities = 62/67 (92%)
Strand = Plus / Plus
Query: 20 gagctcccttcgatccaatccaggaggggaagtggtcggttgcagctgccggttcatgga 79
||||||| ||||||||||| |||||| ||||||||| || ||||||||||||||||||||
Sbjct: 13 gagctcctttcgatccaattcaggagaggaagtggtgggatgcagctgccggttcatgga 72
Query: 80 tacctct 86
|||||||
Sbjct: 73 tacctct 79
>48821_osa-miR159c:pmrd
Length = 197
Score = 91.7 bits (46), Expect = 2e-19
Identities = 147/178 (82%), Gaps = 7/178 (3%)
Strand = Plus / Plus
Query: 20 gagctcccttcgatccaatccaggaggggaagtggtcggttgcagctgccggttcatgga 79
||||||| ||||||||||| |||||| ||||||||| || ||||||||||| ||||||||
Sbjct: 13 gagctcctttcgatccaattcaggagaggaagtggtaggatgcagctgccgattcatgga 72
Query: 80 tacctctctggtgcagcaatggccgc--tgct-cacctctgcacttgcatgggtgtgcat 136
||||||| |||| ||||| || |||| | |||||||||||||||| |||||
Sbjct: 73 tacctctggagtgc----atggcagcaatgctgtaggcctgcacttgcatgggtttgcat 128
Query: 137 gacccgggagatgagcccgccatcatctttccctcgtgcttggattgaagggagctcc 194
|||||||||||||| ||| |||| |||| | || || |||||||||||||||||||
Sbjct: 129 gacccgggagatgaacccaccattgtcttcctctattgattggattgaagggagctcc 186
>51605_ptc-miR159d:pmrd
Length = 194
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 175 cttggattgaagggagctcct 195
|||||||||||||||||||||
Sbjct: 165 cttggattgaagggagctcct 185
>54573_smo-miR159:pmrd
Length = 279
Score = 40.1 bits (20), Expect = 7e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 175 cttggattgaagggagctcc 194
||||||||||||||||||||
Sbjct: 249 cttggattgaagggagctcc 268
>51713_ptc-miR319g:pmrd
Length = 204
Score = 40.1 bits (20), Expect = 7e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 172 gtgcttggattgaagggagctcct 195
||||||||| ||||||||||||||
Sbjct: 172 gtgcttggactgaagggagctcct 195
>51712_ptc-miR319f:pmrd
Length = 202
Score = 40.1 bits (20), Expect = 7e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 172 gtgcttggattgaagggagctcct 195
||||||||| ||||||||||||||
Sbjct: 170 gtgcttggactgaagggagctcct 193
>51562_pta-miR319:pmrd
Length = 206
Score = 40.1 bits (20), Expect = 7e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 175 cttggattgaagggagctcc 194
||||||||||||||||||||
Sbjct: 27 cttggattgaagggagctcc 8
>51555_pta-miR159c:pmrd
Length = 85
Score = 40.1 bits (20), Expect = 7e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 175 cttggattgaagggagctcc 194
||||||||||||||||||||
Sbjct: 49 cttggattgaagggagctcc 68
>51553_pta-miR159a:pmrd
Length = 210
Score = 40.1 bits (20), Expect = 7e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 175 cttggattgaagggagctcc 194
||||||||||||||||||||
Sbjct: 184 cttggattgaagggagctcc 203
>51547_psi-miR159:pmrd
Length = 193
Score = 40.1 bits (20), Expect = 7e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 175 cttggattgaagggagctcc 194
||||||||||||||||||||
Sbjct: 173 cttggattgaagggagctcc 192
>51351_ppl-miR319:pmrd
Length = 204
Score = 40.1 bits (20), Expect = 7e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 172 gtgcttggattgaagggagctcct 195
||||||||| ||||||||||||||
Sbjct: 170 gtgcttggactgaagggagctcct 193
>46933_ath-miR159c:pmrd
Length = 225
Score = 40.1 bits (20), Expect = 7e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 176 ttggattgaagggagctcct 195
||||||||||||||||||||
Sbjct: 196 ttggattgaagggagctcct 215
