miRNEST 2.0, an integrative microRNA resource :: BLAST
>55073_zma-miR396b:pmrd
Length = 136
Score = 270 bits (136), Expect = 3e-73
Identities = 136/136 (100%)
Strand = Plus / Plus
Query: 10 agatggccttctttgtgatcttccacagctttcttgaactgcatctctcagaggagcggc 69
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 agatggccttctttgtgatcttccacagctttcttgaactgcatctctcagaggagcggc 60
Query: 70 agcttcaactcctccacccgcatcagcaggtgcatgcagttcaataaagctgtgggaaac 129
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 agcttcaactcctccacccgcatcagcaggtgcatgcagttcaataaagctgtgggaaac 120
Query: 130 tgcagagagaggccag 145
||||||||||||||||
Sbjct: 121 tgcagagagaggccag 136
>55083_zma-miR396l:pmrd
Length = 97
Score = 192 bits (97), Expect = 5e-50
Identities = 97/97 (100%)
Strand = Plus / Plus
Query: 30 ttccacagctttcttgaactgcatctctcagaggagcggcagcttcaactcctccacccg 89
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaactgcatctctcagaggagcggcagcttcaactcctccacccg 60
Query: 90 catcagcaggtgcatgcagttcaataaagctgtggga 126
|||||||||||||||||||||||||||||||||||||
Sbjct: 61 catcagcaggtgcatgcagttcaataaagctgtggga 97
>55082_zma-miR396k:pmrd
Length = 98
Score = 170 bits (86), Expect = 2e-43
Identities = 96/98 (97%), Gaps = 1/98 (1%)
Strand = Plus / Plus
Query: 30 ttccacagctttcttgaactgc-atctctcagaggagcggcagcttcaactcctccaccc 88
|||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaactgccatctctcacaggagcggcagcttcaactcctccaccc 60
Query: 89 gcatcagcaggtgcatgcagttcaataaagctgtggga 126
||||||||||||||||||||||||||||||||||||||
Sbjct: 61 gcatcagcaggtgcatgcagttcaataaagctgtggga 98
>54486_sbi-miR396b:pmrd
Length = 128
Score = 151 bits (76), Expect = 2e-37
Identities = 122/135 (90%), Gaps = 8/135 (5%)
Strand = Plus / Plus
Query: 10 agatggccttctttgtgatcttccacagctttcttgaactgcatctctcagaggagcggc 69
|||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||
Sbjct: 1 agatggccttctttgtgatcttccacagctttcttgaactgcatctctaagagga---gc 57
Query: 70 agcttcaactcctccacccgcatcagcaggtgcatgcagttcaataaagctgtgggaaac 129
||||| |||| ||| ||| |||| |||||| ||||||||||||||||||||||||||
Sbjct: 58 agcttgaact-ctctacctgcatgagcagg----tgcagttcaataaagctgtgggaaac 112
Query: 130 tgcagagagaggcca 144
|||||||||||||||
Sbjct: 113 tgcagagagaggcca 127
>54645_sof-miR396:pmrd
Length = 134
Score = 123 bits (62), Expect = 4e-29
Identities = 121/139 (87%), Gaps = 10/139 (7%)
Strand = Plus / Plus
Query: 10 agatggccttctttgtgatcttccacagctttcttgaactgcatctctcagaggagcggc 69
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct: 1 agatggccttctttgtgatcttccacagctttcttgaactgcatctctaagaggagcagc 60
Query: 70 ----agcttcaactcctccacccgcatcagcaggtgcatgcagttcaataaagctgtggg 125
||| || | ||| ||| |||| |||||| ||||||||||||||||||||||
Sbjct: 61 tcgaagcctcga--actctacctgcatgagcagg----tgcagttcaataaagctgtggg 114
Query: 126 aaactgcagagagaggcca 144
|||||||||||||||||||
Sbjct: 115 aaactgcagagagaggcca 133
>55072_zma-miR396a:pmrd
Length = 137
Score = 79.8 bits (40), Expect = 5e-16
Identities = 40/40 (100%)
Strand = Plus / Plus
Query: 105 gcagttcaataaagctgtgggaaactgcagagagaggcca 144
||||||||||||||||||||||||||||||||||||||||
Sbjct: 97 gcagttcaataaagctgtgggaaactgcagagagaggcca 136
Score = 52.0 bits (26), Expect = 1e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 28 tcttccacagctttcttgaactgcat 53
||||||||||||||||||||||||||
Sbjct: 19 tcttccacagctttcttgaactgcat 44
Score = 40.1 bits (20), Expect = 5e-04
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 101 gcatgcagttcaataaagctgtgg 124
||||||||||||| ||||||||||
Sbjct: 46 gcatgcagttcaagaaagctgtgg 23
>54485_sbi-miR396a:pmrd
Length = 125
Score = 65.9 bits (33), Expect = 8e-12
Identities = 39/41 (95%)
Strand = Plus / Plus
Query: 105 gcagttcaataaagctgtgggaaactgcagagagaggccag 145
|||||||||||||||||||||||| ||||||||||| ||||
Sbjct: 85 gcagttcaataaagctgtgggaaattgcagagagagaccag 125
Score = 52.0 bits (26), Expect = 1e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 28 tcttccacagctttcttgaactgcat 53
||||||||||||||||||||||||||
Sbjct: 19 tcttccacagctttcttgaactgcat 44
Score = 40.1 bits (20), Expect = 5e-04
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 101 gcatgcagttcaataaagctgtgg 124
||||||||||||| ||||||||||
Sbjct: 46 gcatgcagttcaagaaagctgtgg 23
>48945_osa-miR396a:pmrd
Length = 154
Score = 65.9 bits (33), Expect = 8e-12
Identities = 33/33 (100%)
Strand = Plus / Plus
Query: 20 ctttgtgatcttccacagctttcttgaactgca 52
|||||||||||||||||||||||||||||||||
Sbjct: 1 ctttgtgatcttccacagctttcttgaactgca 33
Score = 56.0 bits (28), Expect = 8e-09
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 105 gcagttcaataaagctgtgggaaactgcagag 136
|||||||||||||||||||||||| |||||||
Sbjct: 123 gcagttcaataaagctgtgggaaattgcagag 154
>48946_osa-miR396b:pmrd
Length = 116
Score = 63.9 bits (32), Expect = 3e-11
Identities = 35/36 (97%)
Strand = Plus / Plus
Query: 20 ctttgtgatcttccacagctttcttgaactgcatct 55
||||||| ||||||||||||||||||||||||||||
Sbjct: 1 ctttgtggtcttccacagctttcttgaactgcatct 36
Score = 50.1 bits (25), Expect = 5e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 104 tgcagttcaataaagctgtgggaaa 128
|||||||||||||||||||||||||
Sbjct: 84 tgcagttcaataaagctgtgggaaa 108
>55079_zma-miR396h:pmrd
Length = 116
Score = 56.0 bits (28), Expect = 8e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 27 atcttccacagctttcttgaactgcatc 54
||||||||||||||||||||||||||||
Sbjct: 1 atcttccacagctttcttgaactgcatc 28
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 105 gcagttcaataaagctgtgggaaa 128
||||||||||||||||||||||||
Sbjct: 92 gcagttcaataaagctgtgggaaa 115
>54870_vvi-miR396c:pmrd
Length = 108
Score = 56.0 bits (28), Expect = 8e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 23 tgtgatcttccacagctttcttgaactg 50
||||||||||||||||||||||||||||
Sbjct: 4 tgtgatcttccacagctttcttgaactg 31
>48578_gma-miR396a:pmrd
Length = 140
Score = 56.0 bits (28), Expect = 8e-09
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 19 tctttgtgatcttccacagctttcttgaactgcatc 54
||||||| |||||||||||||||||||||||||||
Sbjct: 10 tctttgtattcttccacagctttcttgaactgcatc 45
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 108 gttcaataaagctgtgggaa 127
||||||||||||||||||||
Sbjct: 103 gttcaataaagctgtgggaa 122
>48680_lja-miR396:pmrd
Length = 108
Score = 54.0 bits (27), Expect = 3e-08
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 19 tctttgtgatcttccacagctttcttgaactgcat 53
||||||| ||||||||||||||||||||||||||
Sbjct: 5 tctttgtattcttccacagctttcttgaactgcat 39
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 108 gttcaataaagctgtgggaa 127
||||||||||||||||||||
Sbjct: 76 gttcaataaagctgtgggaa 95
>55074_zma-miR396c:pmrd
Length = 104
Score = 52.0 bits (26), Expect = 1e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 28 tcttccacagctttcttgaactgcat 53
||||||||||||||||||||||||||
Sbjct: 2 tcttccacagctttcttgaactgcat 27
Score = 50.1 bits (25), Expect = 5e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 105 gcagttcaataaagctgtgggaaac 129
|||||||||||||||||||||||||
Sbjct: 80 gcagttcaataaagctgtgggaaac 104
Score = 40.1 bits (20), Expect = 5e-04
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 101 gcatgcagttcaataaagctgtgg 124
||||||||||||| ||||||||||
Sbjct: 29 gcatgcagttcaagaaagctgtgg 6
>54871_vvi-miR396d:pmrd
Length = 120
Score = 52.0 bits (26), Expect = 1e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 28 tcttccacagctttcttgaactgcat 53
||||||||||||||||||||||||||
Sbjct: 9 tcttccacagctttcttgaactgcat 34
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 108 gttcaataaagctgtgggaa 127
||||||||||||||||||||
Sbjct: 90 gttcaataaagctgtgggaa 109
>52079_ptc-miRf10257-akr:pmrd
Length = 130
Score = 50.1 bits (25), Expect = 5e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 28 tcttccacagctttcttgaactgca 52
|||||||||||||||||||||||||
Sbjct: 7 tcttccacagctttcttgaactgca 31
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 108 gttcaataaagctgtgggaa 127
||||||||||||||||||||
Sbjct: 104 gttcaataaagctgtgggaa 123
>51735_ptc-miR396b:pmrd
Length = 132
Score = 50.1 bits (25), Expect = 5e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 28 tcttccacagctttcttgaactgca 52
|||||||||||||||||||||||||
Sbjct: 9 tcttccacagctttcttgaactgca 33
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 108 gttcaataaagctgtgggaa 127
||||||||||||||||||||
Sbjct: 106 gttcaataaagctgtgggaa 125
>51734_ptc-miR396a:pmrd
Length = 123
Score = 50.1 bits (25), Expect = 5e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 28 tcttccacagctttcttgaactgca 52
|||||||||||||||||||||||||
Sbjct: 9 tcttccacagctttcttgaactgca 33
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 108 gttcaataaagctgtgggaa 127
||||||||||||||||||||
Sbjct: 97 gttcaataaagctgtgggaa 116
>48485_gcl-miR396a:pmrd
Length = 101
Score = 50.1 bits (25), Expect = 5e-07
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 30 ttccacagctttcttgaactgcatc 54
|||||||||||||||||||||||||
Sbjct: 101 ttccacagctttcttgaactgcatc 77
>48110_ath-miRf11010-akr:pmrd
Length = 165
Score = 50.1 bits (25), Expect = 5e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 28 tcttccacagctttcttgaactgca 52
|||||||||||||||||||||||||
Sbjct: 16 tcttccacagctttcttgaactgca 40
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 108 gttcaataaagctgtgggaa 127
||||||||||||||||||||
Sbjct: 130 gttcaataaagctgtgggaa 149
>47008_ath-miR396a:pmrd
Length = 151
Score = 50.1 bits (25), Expect = 5e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 28 tcttccacagctttcttgaactgca 52
|||||||||||||||||||||||||
Sbjct: 9 tcttccacagctttcttgaactgca 33
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 108 gttcaataaagctgtgggaa 127
||||||||||||||||||||
Sbjct: 123 gttcaataaagctgtgggaa 142
>55081_zma-miR396j:pmrd
Length = 98
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 30 ttccacagctttcttgaactgcat 53
||||||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaactgcat 24
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 105 gcagttcaataaagctgtggga 126
||||||||||||||||||||||
Sbjct: 77 gcagttcaataaagctgtggga 98
Score = 40.1 bits (20), Expect = 5e-04
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 101 gcatgcagttcaataaagctgtgg 124
||||||||||||| ||||||||||
Sbjct: 26 gcatgcagttcaagaaagctgtgg 3
>55080_zma-miR396i:pmrd
Length = 103
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 30 ttccacagctttcttgaactgcat 53
||||||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaactgcat 24
Score = 40.1 bits (20), Expect = 5e-04
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 101 gcatgcagttcaataaagctgtgg 124
||||||||||||| ||||||||||
Sbjct: 26 gcatgcagttcaagaaagctgtgg 3
>46887_aqc-miR396a:pmrd
Length = 122
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 30 ttccacagctttcttgaactgcat 53
||||||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaactgcat 24
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 108 gttcaataaagctgtgggaaa 128
|||||||||||||||||||||
Sbjct: 102 gttcaataaagctgtgggaaa 122
>48508_ghr-miR396c:pmrd
Length = 115
Score = 46.1 bits (23), Expect = 8e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 30 ttccacagctttcttgaactgca 52
|||||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaactgca 23
>48507_ghr-miR396b:pmrd
Length = 115
Score = 46.1 bits (23), Expect = 8e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 30 ttccacagctttcttgaactgca 52
|||||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaactgca 23
>48486_gcl-miR396b:pmrd
Length = 101
Score = 42.1 bits (21), Expect = 1e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 30 ttccacagctttcttgaactgcatc 54
||||| |||||||||||||||||||
Sbjct: 1 ttccatagctttcttgaactgcatc 25
>55078_zma-miR396g:pmrd
Length = 117
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 30 ttccacagctttcttgaact 49
||||||||||||||||||||
Sbjct: 3 ttccacagctttcttgaact 22
>55077_zma-miR396f:pmrd
Length = 166
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 30 ttccacagctttcttgaact 49
||||||||||||||||||||
Sbjct: 3 ttccacagctttcttgaact 22
>54869_vvi-miR396b:pmrd
Length = 108
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 30 ttccacagctttcttgaact 49
||||||||||||||||||||
Sbjct: 14 ttccacagctttcttgaact 33
>54868_vvi-miR396a:pmrd
Length = 116
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 30 ttccacagctttcttgaact 49
||||||||||||||||||||
Sbjct: 14 ttccacagctttcttgaact 33
>54487_sbi-miR396c:pmrd
Length = 162
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 30 ttccacagctttcttgaact 49
||||||||||||||||||||
Sbjct: 21 ttccacagctttcttgaact 40
>53179_ptc-miRf11357-akr:pmrd
Length = 141
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 30 ttccacagctttcttgaact 49
||||||||||||||||||||
Sbjct: 134 ttccacagctttcttgaact 115
>52893_ptc-miRf11071-akr:pmrd
Length = 148
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 30 ttccacagctttcttgaact 49
||||||||||||||||||||
Sbjct: 142 ttccacagctttcttgaact 123
>52304_ptc-miRf10482-akr:pmrd
Length = 102
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 30 ttccacagctttcttgaact 49
||||||||||||||||||||
Sbjct: 93 ttccacagctttcttgaact 74
>52080_ptc-miRf10258-akr:pmrd
Length = 141
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 30 ttccacagctttcttgaact 49
||||||||||||||||||||
Sbjct: 134 ttccacagctttcttgaact 115
>51738_ptc-miR396e:pmrd
Length = 145
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 30 ttccacagctttcttgaact 49
||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaact 30
>51737_ptc-miR396d:pmrd
Length = 154
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 30 ttccacagctttcttgaact 49
||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaact 30
>51736_ptc-miR396c:pmrd
Length = 102
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 30 ttccacagctttcttgaact 49
||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaact 30
>51564_pta-miR396:pmrd
Length = 119
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 30 ttccacagctttcttgaact 49
||||||||||||||||||||
Sbjct: 17 ttccacagctttcttgaact 36
>48947_osa-miR396c:pmrd
Length = 141
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 30 ttccacagctttcttgaact 49
||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaact 30
>48748_mtr-miR396a:pmrd
Length = 93
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 30 ttccacagctttcttgaact 49
||||||||||||||||||||
Sbjct: 6 ttccacagctttcttgaact 25
>48580_gma-miR396c:pmrd
Length = 117
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 30 ttccacagctttcttgaact 49
||||||||||||||||||||
Sbjct: 21 ttccacagctttcttgaact 40
>48579_gma-miR396b:pmrd
Length = 126
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 30 ttccacagctttcttgaact 49
||||||||||||||||||||
Sbjct: 21 ttccacagctttcttgaact 40
>48374_bna-miR396a:pmrd
Length = 117
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 30 ttccacagctttcttgaact 49
||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaact 20
>47009_ath-miR396b:pmrd
Length = 135
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 30 ttccacagctttcttgaact 49
||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaact 30
>46888_aqc-miR396b:pmrd
Length = 89
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 30 ttccacagctttcttgaact 49
||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaact 20
