miRNEST 2.0, an integrative microRNA resource :: BLAST
>55072_zma-miR396a:pmrd
Length = 137
Score = 248 bits (125), Expect = 1e-66
Identities = 134/137 (97%)
Strand = Plus / Plus
Query: 9 acatggccctccttgccgtctcccacagctttcttgaactgcatgccgccggctggtgga 68
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 1 acatggccctccttgccgtcttccacagctttcttgaactgcatgccgccggctggtgga 60
Query: 69 tgctgcgcgctgaaattccggtcgatcccaagaggcgcagttcaataaagctgtgggaaa 128
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tgctgcgcgcttgaattccggtcgatcccaagaggcgcagttcaataaagctgtgggaaa 120
Query: 129 ctgcagagagaggccac 145
|||||||||||||||||
Sbjct: 121 ctgcagagagaggccac 137
>55074_zma-miR396c:pmrd
Length = 104
Score = 182 bits (92), Expect = 5e-47
Identities = 101/104 (97%)
Strand = Plus / Plus
Query: 26 gtctcccacagctttcttgaactgcatgccgccggctggtggatgctgcgcgctgaaatt 85
|||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 1 gtcttccacagctttcttgaactgcatgccgccggctggtggatgctgcgcgcttgaatt 60
Query: 86 ccggtcgatcccaagaggcgcagttcaataaagctgtgggaaac 129
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ccggtcgatcccaagaggcgcagttcaataaagctgtgggaaac 104
>55081_zma-miR396j:pmrd
Length = 98
Score = 174 bits (88), Expect = 1e-44
Identities = 94/96 (97%)
Strand = Plus / Plus
Query: 31 ccacagctttcttgaactgcatgccgccggctggtggatgctgcgcgctgaaattccggt 90
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 3 ccacagctttcttgaactgcatgccgccggctggtggatgctgcgcgcttgaattccggt 62
Query: 91 cgatcccaagaggcgcagttcaataaagctgtggga 126
||||||||||||||||||||||||||||||||||||
Sbjct: 63 cgatcccaagaggcgcagttcaataaagctgtggga 98
>55080_zma-miR396i:pmrd
Length = 103
Score = 111 bits (56), Expect = 2e-25
Identities = 90/96 (93%), Gaps = 4/96 (4%)
Strand = Plus / Plus
Query: 31 ccacagctttcttgaactgcatgccgccggctggtggatgctgcgcgc-tgaaattcc-g 88
|||||||||||||||||||||||||||||||||||||||||||||||| |||| |||| |
Sbjct: 3 ccacagctttcttgaactgcatgccgccggctggtggatgctgcgcgcttgaatttccgg 62
Query: 89 gtcgatcccaagaggc-gcagttcaa-taaagctgt 122
|||||| ||||||||| ||||||||| |||||||||
Sbjct: 63 gtcgattccaagaggcggcagttcaattaaagctgt 98
>54485_sbi-miR396a:pmrd
Length = 125
Score = 83.8 bits (42), Expect = 3e-17
Identities = 45/46 (97%)
Strand = Plus / Plus
Query: 9 acatggccctccttgccgtctcccacagctttcttgaactgcatgc 54
||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 1 acatggccctccttgccgtcttccacagctttcttgaactgcatgc 46
Score = 63.9 bits (32), Expect = 3e-11
Identities = 35/36 (97%)
Strand = Plus / Plus
Query: 105 gcagttcaataaagctgtgggaaactgcagagagag 140
|||||||||||||||||||||||| |||||||||||
Sbjct: 85 gcagttcaataaagctgtgggaaattgcagagagag 120
>55073_zma-miR396b:pmrd
Length = 136
Score = 79.8 bits (40), Expect = 5e-16
Identities = 40/40 (100%)
Strand = Plus / Plus
Query: 105 gcagttcaataaagctgtgggaaactgcagagagaggcca 144
||||||||||||||||||||||||||||||||||||||||
Sbjct: 96 gcagttcaataaagctgtgggaaactgcagagagaggcca 135
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 31 ccacagctttcttgaactgcat 52
||||||||||||||||||||||
Sbjct: 23 ccacagctttcttgaactgcat 44
Score = 44.1 bits (22), Expect = 3e-05
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 29 tcccacagctttcttgaactgcatgc 54
|||||||||||| |||||||||||||
Sbjct: 117 tcccacagctttattgaactgcatgc 92
>54645_sof-miR396:pmrd
Length = 134
Score = 79.8 bits (40), Expect = 5e-16
Identities = 40/40 (100%)
Strand = Plus / Plus
Query: 105 gcagttcaataaagctgtgggaaactgcagagagaggcca 144
||||||||||||||||||||||||||||||||||||||||
Sbjct: 94 gcagttcaataaagctgtgggaaactgcagagagaggcca 133
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 31 ccacagctttcttgaactgcat 52
||||||||||||||||||||||
Sbjct: 23 ccacagctttcttgaactgcat 44
>54486_sbi-miR396b:pmrd
Length = 128
Score = 79.8 bits (40), Expect = 5e-16
Identities = 40/40 (100%)
Strand = Plus / Plus
Query: 105 gcagttcaataaagctgtgggaaactgcagagagaggcca 144
||||||||||||||||||||||||||||||||||||||||
Sbjct: 88 gcagttcaataaagctgtgggaaactgcagagagaggcca 127
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 31 ccacagctttcttgaactgcat 52
||||||||||||||||||||||
Sbjct: 23 ccacagctttcttgaactgcat 44
>48945_osa-miR396a:pmrd
Length = 154
Score = 56.0 bits (28), Expect = 8e-09
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 105 gcagttcaataaagctgtgggaaactgcagag 136
|||||||||||||||||||||||| |||||||
Sbjct: 123 gcagttcaataaagctgtgggaaattgcagag 154
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 31 ccacagctttcttgaactgca 51
|||||||||||||||||||||
Sbjct: 13 ccacagctttcttgaactgca 33
>55079_zma-miR396h:pmrd
Length = 116
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 105 gcagttcaataaagctgtgggaaa 128
||||||||||||||||||||||||
Sbjct: 92 gcagttcaataaagctgtgggaaa 115
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 31 ccacagctttcttgaactgcat 52
||||||||||||||||||||||
Sbjct: 6 ccacagctttcttgaactgcat 27
>48946_osa-miR396b:pmrd
Length = 116
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 105 gcagttcaataaagctgtgggaaa 128
||||||||||||||||||||||||
Sbjct: 85 gcagttcaataaagctgtgggaaa 108
Score = 46.1 bits (23), Expect = 8e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 26 gtctcccacagctttcttgaactgcat 52
|||| ||||||||||||||||||||||
Sbjct: 8 gtcttccacagctttcttgaactgcat 34
>46887_aqc-miR396a:pmrd
Length = 122
Score = 46.1 bits (23), Expect = 8e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 31 ccacagctttcttgaactgcatg 53
|||||||||||||||||||||||
Sbjct: 3 ccacagctttcttgaactgcatg 25
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 108 gttcaataaagctgtgggaaa 128
|||||||||||||||||||||
Sbjct: 102 gttcaataaagctgtgggaaa 122
>55083_zma-miR396l:pmrd
Length = 97
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 31 ccacagctttcttgaactgcat 52
||||||||||||||||||||||
Sbjct: 3 ccacagctttcttgaactgcat 24
Score = 44.1 bits (22), Expect = 3e-05
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 29 tcccacagctttcttgaactgcatgc 54
|||||||||||| |||||||||||||
Sbjct: 97 tcccacagctttattgaactgcatgc 72
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 105 gcagttcaataaagctgtggga 126
||||||||||||||||||||||
Sbjct: 76 gcagttcaataaagctgtggga 97
>55082_zma-miR396k:pmrd
Length = 98
Score = 44.1 bits (22), Expect = 3e-05
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 29 tcccacagctttcttgaactgcatgc 54
|||||||||||| |||||||||||||
Sbjct: 98 tcccacagctttattgaactgcatgc 73
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 105 gcagttcaataaagctgtggga 126
||||||||||||||||||||||
Sbjct: 77 gcagttcaataaagctgtggga 98
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 31 ccacagctttcttgaactgc 50
||||||||||||||||||||
Sbjct: 3 ccacagctttcttgaactgc 22
>54871_vvi-miR396d:pmrd
Length = 120
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 31 ccacagctttcttgaactgcat 52
||||||||||||||||||||||
Sbjct: 13 ccacagctttcttgaactgcat 34
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 108 gttcaataaagctgtgggaa 127
||||||||||||||||||||
Sbjct: 90 gttcaataaagctgtgggaa 109
>48680_lja-miR396:pmrd
Length = 108
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 31 ccacagctttcttgaactgcat 52
||||||||||||||||||||||
Sbjct: 18 ccacagctttcttgaactgcat 39
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 108 gttcaataaagctgtgggaa 127
||||||||||||||||||||
Sbjct: 76 gttcaataaagctgtgggaa 95
>48578_gma-miR396a:pmrd
Length = 140
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 31 ccacagctttcttgaactgcat 52
||||||||||||||||||||||
Sbjct: 23 ccacagctttcttgaactgcat 44
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 108 gttcaataaagctgtgggaa 127
||||||||||||||||||||
Sbjct: 103 gttcaataaagctgtgggaa 122
>48485_gcl-miR396a:pmrd
Length = 101
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 31 ccacagctttcttgaactgcat 52
||||||||||||||||||||||
Sbjct: 99 ccacagctttcttgaactgcat 78
>52079_ptc-miRf10257-akr:pmrd
Length = 130
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 31 ccacagctttcttgaactgca 51
|||||||||||||||||||||
Sbjct: 11 ccacagctttcttgaactgca 31
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 108 gttcaataaagctgtgggaa 127
||||||||||||||||||||
Sbjct: 104 gttcaataaagctgtgggaa 123
>51735_ptc-miR396b:pmrd
Length = 132
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 31 ccacagctttcttgaactgca 51
|||||||||||||||||||||
Sbjct: 13 ccacagctttcttgaactgca 33
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 108 gttcaataaagctgtgggaa 127
||||||||||||||||||||
Sbjct: 106 gttcaataaagctgtgggaa 125
>51734_ptc-miR396a:pmrd
Length = 123
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 31 ccacagctttcttgaactgca 51
|||||||||||||||||||||
Sbjct: 13 ccacagctttcttgaactgca 33
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 108 gttcaataaagctgtgggaa 127
||||||||||||||||||||
Sbjct: 97 gttcaataaagctgtgggaa 116
>48508_ghr-miR396c:pmrd
Length = 115
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 31 ccacagctttcttgaactgca 51
|||||||||||||||||||||
Sbjct: 3 ccacagctttcttgaactgca 23
>48507_ghr-miR396b:pmrd
Length = 115
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 31 ccacagctttcttgaactgca 51
|||||||||||||||||||||
Sbjct: 3 ccacagctttcttgaactgca 23
>48110_ath-miRf11010-akr:pmrd
Length = 165
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 31 ccacagctttcttgaactgca 51
|||||||||||||||||||||
Sbjct: 20 ccacagctttcttgaactgca 40
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 108 gttcaataaagctgtgggaa 127
||||||||||||||||||||
Sbjct: 130 gttcaataaagctgtgggaa 149
>47008_ath-miR396a:pmrd
Length = 151
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 31 ccacagctttcttgaactgca 51
|||||||||||||||||||||
Sbjct: 13 ccacagctttcttgaactgca 33
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 108 gttcaataaagctgtgggaa 127
||||||||||||||||||||
Sbjct: 123 gttcaataaagctgtgggaa 142
>54869_vvi-miR396b:pmrd
Length = 108
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 29 tcccacagctttcttgaact 48
||||||||||||||||||||
Sbjct: 97 tcccacagctttcttgaact 78
>54584_smo-miR396:pmrd
Length = 168
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 29 tcccacagctttcttgaact 48
||||||||||||||||||||
Sbjct: 155 tcccacagctttcttgaact 136
