miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>54517_sbi-miR437u:pmrd
Length = 164
Score = 54.0 bits (27), Expect = 5e-08
Identities = 36/39 (92%)
Strand = Plus / Plus
Query: 144 ttttctgtaaaccttgtgaaagttagagaagtttgactt 182
|||||| ||||| | ||||||||||||||||||||||||
Sbjct: 126 ttttctataaacttggtgaaagttagagaagtttgactt 164
>54505_sbi-miR437i:pmrd
Length = 170
Score = 54.0 bits (27), Expect = 5e-08
Identities = 36/39 (92%)
Strand = Plus / Plus
Query: 144 ttttctgtaaaccttgtgaaagttagagaagtttgactt 182
|||||| ||||| |||| |||||||||||||||||||||
Sbjct: 132 ttttctataaactttgtcaaagttagagaagtttgactt 170
>54506_sbi-miR437j:pmrd
Length = 172
Score = 50.1 bits (25), Expect = 7e-07
Identities = 40/45 (88%)
Strand = Plus / Minus
Query: 136 ttggagcattttctgtaaaccttgtgaaagttagagaagtttgac 180
|||| ||||||||| ||||| | || |||||||||||||||||||
Sbjct: 45 ttggtgcattttctataaacttggtcaaagttagagaagtttgac 1
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 162 aaagttagagaagtttgactt 182
|||||||||||||||||||||
Sbjct: 152 aaagttagagaagtttgactt 172
>54504_sbi-miR437g:pmrd
Length = 176
Score = 50.1 bits (25), Expect = 7e-07
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 143 attttctgtaaaccttgtgaaagttagagaagtttgactta 183
||||||| ||||| | || ||||||||||||||||||||||
Sbjct: 135 attttctataaacttggtcaaagttagagaagtttgactta 175
>55112_zma-miR437f:pmrd
Length = 342
Score = 48.1 bits (24), Expect = 3e-06
Identities = 36/40 (90%)
Strand = Plus / Minus
Query: 144 ttttctgtaaaccttgtgaaagttagagaagtttgactta 183
|||||| ||||| | || ||||||||||||||||||||||
Sbjct: 40 ttttctataaacttggtcaaagttagagaagtttgactta 1
>55107_zma-miR437a:pmrd
Length = 342
Score = 48.1 bits (24), Expect = 3e-06
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 144 ttttctgtaaaccttgtgaaagttagagaagtttgactta 183
|||||| ||||| | || ||||||||||||||||||||||
Sbjct: 303 ttttctataaacttggtcaaagttagagaagtttgactta 342
>54519_sbi-miR437w:pmrd
Length = 173
Score = 48.1 bits (24), Expect = 3e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 159 gtgaaagttagagaagtttgactt 182
||||||||||||||||||||||||
Sbjct: 150 gtgaaagttagagaagtttgactt 173
>54503_sbi-miR437f:pmrd
Length = 174
Score = 48.1 bits (24), Expect = 3e-06
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 144 ttttctgtaaaccttgtgaaagttagagaagtttgactta 183
|||||| ||||| | || ||||||||||||||||||||||
Sbjct: 134 ttttctataaacttggtcaaagttagagaagtttgactta 173
Score = 40.1 bits (20), Expect = 7e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 162 aaagttagagaagtttgact 181
||||||||||||||||||||
Sbjct: 20 aaagttagagaagtttgact 1
>54500_sbi-miR437b:pmrd
Length = 171
Score = 48.1 bits (24), Expect = 3e-06
Identities = 46/52 (88%), Gaps = 1/52 (1%)
Strand = Plus / Plus
Query: 132 gatgttggagcatttt-ctgtaaaccttgtgaaagttagagaagtttgactt 182
|||||||| ||||||| || ||||| | || |||||||||||||||||||||
Sbjct: 120 gatgttggtgcatttttctataaacttggtcaaagttagagaagtttgactt 171
>48988_osa-miR437:pmrd
Length = 213
Score = 48.1 bits (24), Expect = 3e-06
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 144 ttttctgtaaaccttgtgaaagttagagaagtttgactta 183
|||||| ||||| | || ||||||||||||||||||||||
Sbjct: 137 ttttctataaacttggtcaaagttagagaagtttgactta 176
>48987_osa-miR437:pmrd
Length = 213
Score = 48.1 bits (24), Expect = 3e-06
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 144 ttttctgtaaaccttgtgaaagttagagaagtttgactta 183
|||||| ||||| | || ||||||||||||||||||||||
Sbjct: 137 ttttctataaacttggtcaaagttagagaagtttgactta 176
>48986_osa-miR437:pmrd
Length = 213
Score = 48.1 bits (24), Expect = 3e-06
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 144 ttttctgtaaaccttgtgaaagttagagaagtttgactta 183
|||||| ||||| | || ||||||||||||||||||||||
Sbjct: 137 ttttctataaacttggtcaaagttagagaagtttgactta 176
>54516_sbi-miR437t:pmrd
Length = 170
Score = 46.1 bits (23), Expect = 1e-05
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 144 ttttctgtaaaccttgtgaaagttagagaagtttgactt 182
|||||| ||||| | || |||||||||||||||||||||
Sbjct: 132 ttttctataaacttggtcaaagttagagaagtttgactt 170
>54510_sbi-miR437n:pmrd
Length = 182
Score = 46.1 bits (23), Expect = 1e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 162 aaagttagagaagtttgacttat 184
|||||||||||||||||||||||
Sbjct: 160 aaagttagagaagtttgacttat 182
>54502_sbi-miR437e:pmrd
Length = 101
Score = 46.1 bits (23), Expect = 1e-05
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 144 ttttctgtaaaccttgtgaaagttagagaagtttgactt 182
||||||| |||| | || |||||||||||||||||||||
Sbjct: 63 ttttctgaaaacttggtcaaagttagagaagtttgactt 101
>55108_zma-miR437b:pmrd
Length = 168
Score = 44.1 bits (22), Expect = 4e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 162 aaagttagagaagtttgactta 183
||||||||||||||||||||||
Sbjct: 147 aaagttagagaagtttgactta 168
>54651_sof-miR437:pmrd
Length = 149
Score = 44.1 bits (22), Expect = 4e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 162 aaagttagagaagtttgactta 183
||||||||||||||||||||||
Sbjct: 128 aaagttagagaagtttgactta 149
>54515_sbi-miR437s:pmrd
Length = 176
Score = 44.1 bits (22), Expect = 4e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 162 aaagttagagaagtttgactta 183
||||||||||||||||||||||
Sbjct: 154 aaagttagagaagtttgactta 175
>54514_sbi-miR437r:pmrd
Length = 180
Score = 44.1 bits (22), Expect = 4e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 162 aaagttagagaagtttgactta 183
||||||||||||||||||||||
Sbjct: 158 aaagttagagaagtttgactta 179
>54513_sbi-miR437q:pmrd
Length = 160
Score = 44.1 bits (22), Expect = 4e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 162 aaagttagagaagtttgactta 183
||||||||||||||||||||||
Sbjct: 138 aaagttagagaagtttgactta 159
>54512_sbi-miR437p:pmrd
Length = 188
Score = 44.1 bits (22), Expect = 4e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 162 aaagttagagaagtttgactta 183
||||||||||||||||||||||
Sbjct: 166 aaagttagagaagtttgactta 187
>54511_sbi-miR437o:pmrd
Length = 175
Score = 44.1 bits (22), Expect = 4e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 162 aaagttagagaagtttgactta 183
||||||||||||||||||||||
Sbjct: 153 aaagttagagaagtttgactta 174
Score = 40.1 bits (20), Expect = 7e-04
Identities = 32/36 (88%)
Strand = Plus / Minus
Query: 103 tttcatggataatttaatgaaatcaatttgatgttg 138
|||||| || |||||||||||| ||||||||||||
Sbjct: 87 tttcatagagaatttaatgaaactaatttgatgttg 52
>54509_sbi-miR437m:pmrd
Length = 174
Score = 44.1 bits (22), Expect = 4e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 162 aaagttagagaagtttgactta 183
||||||||||||||||||||||
Sbjct: 152 aaagttagagaagtttgactta 173
>54507_sbi-miR437k:pmrd
Length = 172
Score = 44.1 bits (22), Expect = 4e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 162 aaagttagagaagtttgactta 183
||||||||||||||||||||||
Sbjct: 150 aaagttagagaagtttgactta 171
>55110_zma-miR437d:pmrd
Length = 179
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 163 aagttagagaagtttgactta 183
|||||||||||||||||||||
Sbjct: 156 aagttagagaagtttgactta 176
>54518_sbi-miR437v:pmrd
Length = 114
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 162 aaagttagagaagtttgactt 182
|||||||||||||||||||||
Sbjct: 94 aaagttagagaagtttgactt 114
>54508_sbi-miR437l:pmrd
Length = 170
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 162 aaagttagagaagtttgactt 182
|||||||||||||||||||||
Sbjct: 150 aaagttagagaagtttgactt 170
>54501_sbi-miR437d:pmrd
Length = 136
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 162 aaagttagagaagtttgactt 182
|||||||||||||||||||||
Sbjct: 114 aaagttagagaagtttgactt 134
>55113_zma-miR437g:pmrd
Length = 174
Score = 40.1 bits (20), Expect = 7e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 162 aaagttagagaagtttgact 181
||||||||||||||||||||
Sbjct: 154 aaagttagagaagtttgact 173
>51322_pci-miR437:pmrd
Length = 166
Score = 40.1 bits (20), Expect = 7e-04
Identities = 41/48 (85%)
Strand = Plus / Minus
Query: 136 ttggagcattttctgtaaaccttgtgaaagttagagaagtttgactta 183
|||| ||| ||||| ||||| | || |||| |||||||||||||||||
Sbjct: 87 ttggcgcactttctataaacttggtcaaagctagagaagtttgactta 40
