miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>54941_zma-miR160d:pmrd
Length = 142
Score = 242 bits (122), Expect = 5e-65
Identities = 122/122 (100%)
Strand = Plus / Plus
Query: 1 gggatcgatatgcctggctccctgtatgccactcgcatggctgccaactcatcatgcata 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11 gggatcgatatgcctggctccctgtatgccactcgcatggctgccaactcatcatgcata 70
Query: 61 cactgctagctagtcgttggctccactgcggatggcgtgcgtggagccaagcatgaccga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 71 cactgctagctagtcgttggctccactgcggatggcgtgcgtggagccaagcatgaccga 130
Query: 121 tc 122
||
Sbjct: 131 tc 132
>48830_osa-miR160e:pmrd
Length = 114
Score = 75.8 bits (38), Expect = 7e-15
Identities = 41/42 (97%)
Strand = Plus / Plus
Query: 7 gatatgcctggctccctgtatgccactcgcatggctgccaac 48
|||||||||||||||||||||||| |||||||||||||||||
Sbjct: 7 gatatgcctggctccctgtatgccgctcgcatggctgccaac 48
>54675_tae-miR160:pmrd
Length = 148
Score = 71.9 bits (36), Expect = 1e-13
Identities = 42/44 (95%)
Strand = Plus / Plus
Query: 7 gatatgcctggctccctgtatgccactcgcatggctgccaactc 50
|||||||||||||||||||||||||||||| | |||||||||||
Sbjct: 18 gatatgcctggctccctgtatgccactcgcgtagctgccaactc 61
Score = 65.9 bits (33), Expect = 6e-12
Identities = 42/45 (93%)
Strand = Plus / Plus
Query: 75 cgttggctccactgcggatggcgtgcgtggagccaagcatgaccg 119
||||||||| || |||||||||||||| |||||||||||||||||
Sbjct: 73 cgttggctctaccgcggatggcgtgcgaggagccaagcatgaccg 117
>48829_osa-miR160d:pmrd
Length = 142
Score = 67.9 bits (34), Expect = 2e-12
Identities = 40/42 (95%)
Strand = Plus / Plus
Query: 77 ttggctccactgcggatggcgtgcgtggagccaagcatgacc 118
||||||| ||||||||||||||||| ||||||||||||||||
Sbjct: 101 ttggctctactgcggatggcgtgcgaggagccaagcatgacc 142
Score = 65.9 bits (33), Expect = 6e-12
Identities = 39/41 (95%)
Strand = Plus / Plus
Query: 7 gatatgcctggctccctgtatgccactcgcatggctgccaa 47
|||||||||||||||||||||||||||||| | ||||||||
Sbjct: 4 gatatgcctggctccctgtatgccactcgcgtagctgccaa 44
>54407_sbi-miR160d:pmrd
Length = 100
Score = 63.9 bits (32), Expect = 3e-11
Identities = 87/103 (84%), Gaps = 3/103 (2%)
Strand = Plus / Plus
Query: 11 tgcctggctccctgtatgccactcgcatggctgccaactcatcatgcatacactgctagc 70
|||||||||||||||||||||||||| | ||||||||| |||| | ||| || || |
Sbjct: 1 tgcctggctccctgtatgccactcgcttagctgccaacaactcatac-tacgttgttaac 59
Query: 71 tagtcgttggctccactgcggatggcgtgcgtggagccaagca 113
| ||||||||| ||||||||||||||||| |||||||||||
Sbjct: 60 ga--cgttggctctactgcggatggcgtgcgaggagccaagca 100
>54943_zma-miR160f:pmrd
Length = 116
Score = 61.9 bits (31), Expect = 1e-10
Identities = 34/35 (97%)
Strand = Plus / Plus
Query: 8 atatgcctggctccctgtatgccactcgcatggct 42
||||||||||||||||||||||| |||||||||||
Sbjct: 18 atatgcctggctccctgtatgccgctcgcatggct 52
>54942_zma-miR160e:pmrd
Length = 94
Score = 61.9 bits (31), Expect = 1e-10
Identities = 34/35 (97%)
Strand = Plus / Plus
Query: 8 atatgcctggctccctgtatgccactcgcatggct 42
|||||||||||||||||||||||||||||| ||||
Sbjct: 6 atatgcctggctccctgtatgccactcgcacggct 40
>48833_osa-miR160n:pmrd
Length = 131
Score = 60.0 bits (30), Expect = 4e-10
Identities = 36/38 (94%)
Strand = Plus / Plus
Query: 77 ttggctccactgcggatggcgtgcgtggagccaagcat 114
||||||| ||||||||||||||||| ||||||||||||
Sbjct: 94 ttggctctactgcggatggcgtgcgaggagccaagcat 131
Score = 58.0 bits (29), Expect = 2e-09
Identities = 35/37 (94%)
Strand = Plus / Plus
Query: 11 tgcctggctccctgtatgccactcgcatggctgccaa 47
|||||||||||||||||||||||||| | ||||||||
Sbjct: 1 tgcctggctccctgtatgccactcgcgtagctgccaa 37
>54946_zma-miR160i:pmrd
Length = 81
Score = 58.0 bits (29), Expect = 2e-09
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 10 atgcctggctccctgtatgccactcgcatggct 42
|||||||||||||||||||||||||||| ||||
Sbjct: 1 atgcctggctccctgtatgccactcgcacggct 33
>54408_sbi-miR160e:pmrd
Length = 95
Score = 56.0 bits (28), Expect = 6e-09
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 11 tgcctggctccctgtatgccactcgcatggct 42
||||||||||||||||||||||||||| ||||
Sbjct: 1 tgcctggctccctgtatgccactcgcacggct 32
>48658_hvv-miR160a:pmrd
Length = 344
Score = 50.1 bits (25), Expect = 4e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 7 gatatgcctggctccctgtatgcca 31
|||||||||||||||||||||||||
Sbjct: 320 gatatgcctggctccctgtatgcca 344
>54940_zma-miR160c:pmrd
Length = 100
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 11 tgcctggctccctgtatgccactc 34
||||||||||||||||||||||||
Sbjct: 7 tgcctggctccctgtatgccactc 30
>54783_vvi-miR160f:pmrd
Length = 102
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 8 atatgcctggctccctgtatgcca 31
||||||||||||||||||||||||
Sbjct: 8 atatgcctggctccctgtatgcca 31
>54759_ttu-miR160a:pmrd
Length = 87
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 11 tgcctggctccctgtatgccactc 34
||||||||||||||||||||||||
Sbjct: 1 tgcctggctccctgtatgccactc 24
>54541_sly-miR160a:pmrd
Length = 129
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 8 atatgcctggctccctgtatgcca 31
||||||||||||||||||||||||
Sbjct: 17 atatgcctggctccctgtatgcca 40
>54406_sbi-miR160c:pmrd
Length = 83
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 11 tgcctggctccctgtatgccactc 34
||||||||||||||||||||||||
Sbjct: 1 tgcctggctccctgtatgccactc 24
>53874_ptc-miRf12052-akr:pmrd
Length = 110
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 9 tatgcctggctccctgtatgccac 32
||||||||||||||||||||||||
Sbjct: 10 tatgcctggctccctgtatgccac 33
>51611_ptc-miR160d:pmrd
Length = 103
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 9 tatgcctggctccctgtatgccac 32
||||||||||||||||||||||||
Sbjct: 9 tatgcctggctccctgtatgccac 32
>51608_ptc-miR160a:pmrd
Length = 102
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 9 tatgcctggctccctgtatgccac 32
||||||||||||||||||||||||
Sbjct: 9 tatgcctggctccctgtatgccac 32
>48832_osa-miR160m:pmrd
Length = 82
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 11 tgcctggctccctgtatgccactc 34
||||||||||||||||||||||||
Sbjct: 1 tgcctggctccctgtatgccactc 24
>48828_osa-miR160c:pmrd
Length = 99
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 11 tgcctggctccctgtatgccactc 34
||||||||||||||||||||||||
Sbjct: 7 tgcctggctccctgtatgccactc 30
>48827_osa-miR160b:pmrd
Length = 139
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 11 tgcctggctccctgtatgccactc 34
||||||||||||||||||||||||
Sbjct: 30 tgcctggctccctgtatgccactc 53
>46936_ath-miR160c:pmrd
Length = 89
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 9 tatgcctggctccctgtatgccac 32
||||||||||||||||||||||||
Sbjct: 3 tatgcctggctccctgtatgccac 26
>51363_ppt-miR160e:pmrd
Length = 138
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 11 tgcctggctccctgtatgccact 33
|||||||||||||||||||||||
Sbjct: 30 tgcctggctccctgtatgccact 52
>48791_oba-miR160:pmrd
Length = 90
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 11 tgcctggctccctgtatgccact 33
|||||||||||||||||||||||
Sbjct: 4 tgcctggctccctgtatgccact 26
>48397_bra-miR160a:pmrd
Length = 127
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 9 tatgcctggctccctgtatgcca 31
|||||||||||||||||||||||
Sbjct: 24 tatgcctggctccctgtatgcca 46
>48396_bra-miR160a:pmrd
Length = 127
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 9 tatgcctggctccctgtatgcca 31
|||||||||||||||||||||||
Sbjct: 24 tatgcctggctccctgtatgcca 46
>47213_ath-miRf10113-akr:pmrd
Length = 85
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 9 tatgcctggctccctgtatgcca 31
|||||||||||||||||||||||
Sbjct: 2 tatgcctggctccctgtatgcca 24
>46934_ath-miR160a:pmrd
Length = 85
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 9 tatgcctggctccctgtatgcca 31
|||||||||||||||||||||||
Sbjct: 2 tatgcctggctccctgtatgcca 24
>54947_zma-miR160m:pmrd
Length = 81
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 tgcctggctccctgtatgccac 32
||||||||||||||||||||||
Sbjct: 1 tgcctggctccctgtatgccac 22
>54945_zma-miR160h:pmrd
Length = 86
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 tgcctggctccctgtatgccac 32
||||||||||||||||||||||
Sbjct: 1 tgcctggctccctgtatgccac 22
>54944_zma-miR160g:pmrd
Length = 86
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 tgcctggctccctgtatgccac 32
||||||||||||||||||||||
Sbjct: 1 tgcctggctccctgtatgccac 22
>54939_zma-miR160b:pmrd
Length = 121
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 tgcctggctccctgtatgccac 32
||||||||||||||||||||||
Sbjct: 21 tgcctggctccctgtatgccac 42
>54938_zma-miR160a:pmrd
Length = 104
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 tgcctggctccctgtatgccac 32
||||||||||||||||||||||
Sbjct: 10 tgcctggctccctgtatgccac 31
>54781_vvi-miR160d:pmrd
Length = 102
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 10 atgcctggctccctgtatgcca 31
||||||||||||||||||||||
Sbjct: 10 atgcctggctccctgtatgcca 31
Score = 40.1 bits (20), Expect = 4e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 88 gcggatggcgtgcgtggagccaagcatg 115
|||||||||||||| ||||||| |||||
Sbjct: 65 gcggatggcgtgcgaggagccatgcatg 92
>54780_vvi-miR160c:pmrd
Length = 106
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 tgcctggctccctgtatgccac 32
||||||||||||||||||||||
Sbjct: 11 tgcctggctccctgtatgccac 32
Score = 40.1 bits (20), Expect = 4e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 87 tgcggatggcgtgcgtggagccaagcat 114
||||| ||||||||| ||||||||||||
Sbjct: 68 tgcgggtggcgtgcgaggagccaagcat 95
>54575_smo-miR160b:pmrd
Length = 108
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 tgcctggctccctgtatgccac 32
||||||||||||||||||||||
Sbjct: 13 tgcctggctccctgtatgccac 34
>54405_sbi-miR160b:pmrd
Length = 82
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 tgcctggctccctgtatgccac 32
||||||||||||||||||||||
Sbjct: 1 tgcctggctccctgtatgccac 22
>54404_sbi-miR160a:pmrd
Length = 84
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 tgcctggctccctgtatgccac 32
||||||||||||||||||||||
Sbjct: 1 tgcctggctccctgtatgccac 22
>51364_ppt-miR160f:pmrd
Length = 138
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 tgcctggctccctgtatgccac 32
||||||||||||||||||||||
Sbjct: 30 tgcctggctccctgtatgccac 51
>51359_ppt-miR160a:pmrd
Length = 99
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 tgcctggctccctgtatgccac 32
||||||||||||||||||||||
Sbjct: 11 tgcctggctccctgtatgccac 32
>51334_pga-miR160:pmrd
Length = 80
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 tgcctggctccctgtatgccac 32
||||||||||||||||||||||
Sbjct: 1 tgcctggctccctgtatgccac 22
>48826_osa-miR160a:pmrd
Length = 88
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 tgcctggctccctgtatgccac 32
||||||||||||||||||||||
Sbjct: 4 tgcctggctccctgtatgccac 25
>47338_ath-miRf10238-akr:pmrd
Length = 89
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 tgcctggctccctgtatgccac 32
||||||||||||||||||||||
Sbjct: 5 tgcctggctccctgtatgccac 26
>46935_ath-miR160b:pmrd
Length = 89
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 tgcctggctccctgtatgccac 32
||||||||||||||||||||||
Sbjct: 5 tgcctggctccctgtatgccac 26
>54574_smo-miR160a:pmrd
Length = 106
Score = 42.1 bits (21), Expect = 9e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 11 tgcctggctccctgtatgcca 31
|||||||||||||||||||||
Sbjct: 11 tgcctggctccctgtatgcca 31
>51610_ptc-miR160c:pmrd
Length = 98
Score = 42.1 bits (21), Expect = 9e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 11 tgcctggctccctgtatgcca 31
|||||||||||||||||||||
Sbjct: 11 tgcctggctccctgtatgcca 31
>51609_ptc-miR160b:pmrd
Length = 98
Score = 42.1 bits (21), Expect = 9e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 11 tgcctggctccctgtatgcca 31
|||||||||||||||||||||
Sbjct: 11 tgcctggctccctgtatgcca 31
>51367_ppt-miR160i:pmrd
Length = 139
Score = 42.1 bits (21), Expect = 9e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 12 gcctggctccctgtatgccac 32
|||||||||||||||||||||
Sbjct: 31 gcctggctccctgtatgccac 51
>48704_mtr-miR160e:pmrd
Length = 91
Score = 42.1 bits (21), Expect = 9e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 11 tgcctggctccctgtatgcca 31
|||||||||||||||||||||
Sbjct: 6 tgcctggctccctgtatgcca 26
>48703_mtr-miR160d:pmrd
Length = 91
Score = 42.1 bits (21), Expect = 9e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 11 tgcctggctccctgtatgcca 31
|||||||||||||||||||||
Sbjct: 6 tgcctggctccctgtatgcca 26
>48702_mtr-miR160b:pmrd
Length = 91
Score = 42.1 bits (21), Expect = 9e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 11 tgcctggctccctgtatgcca 31
|||||||||||||||||||||
Sbjct: 6 tgcctggctccctgtatgcca 26
>48635_gra-miR160b:pmrd
Length = 293
Score = 42.1 bits (21), Expect = 9e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 10 atgcctggctccctgtatgcc 30
|||||||||||||||||||||
Sbjct: 272 atgcctggctccctgtatgcc 292
>48634_gra-miR160a:pmrd
Length = 106
Score = 42.1 bits (21), Expect = 9e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 10 atgcctggctccctgtatgcc 30
|||||||||||||||||||||
Sbjct: 85 atgcctggctccctgtatgcc 105
>48542_gma-miR160a:pmrd
Length = 119
Score = 42.1 bits (21), Expect = 9e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 11 tgcctggctccctgtatgcca 31
|||||||||||||||||||||
Sbjct: 21 tgcctggctccctgtatgcca 41
>48306_bdi-miR160:pmrd
Length = 120
Score = 42.1 bits (21), Expect = 9e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 10 atgcctggctccctgtatgcc 30
|||||||||||||||||||||
Sbjct: 17 atgcctggctccctgtatgcc 37
>46865_aqc-miR160b:pmrd
Length = 82
Score = 42.1 bits (21), Expect = 9e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 11 tgcctggctccctgtatgcca 31
|||||||||||||||||||||
Sbjct: 1 tgcctggctccctgtatgcca 21
