miRNEST 2.0, an integrative microRNA resource :: BLAST
>55104_zma-miR408:pmrd
Length = 191
Score = 204 bits (103), Expect = 2e-53
Identities = 173/192 (90%), Gaps = 12/192 (6%)
Strand = Plus / Plus
Query: 2 ggggttggttttaatttg-agacaggcat-aggcagagcatgggatggggccatcaacaa 59
|||||||||||| ||||| ||||||| || || |||||||||||||||||||||||||||
Sbjct: 1 ggggttggttttgatttggagacagggatgagacagagcatgggatggggccatcaacaa 60
Query: 60 agtggagggactagcttgtgagtgcagaaagaaggtgcca------gtggctccctggtg 113
|||||||||||||||||| ||| ||||||||||||||||| ||| ||||| ||||
Sbjct: 61 agtggagggactagcttgcgag-gcagaaagaaggtgccagtgccggtgcctccccggtg 119
Query: 114 aaacgatgatggcagtgttgttgctccctcccctgcactgcctcttccctggctcctccg 173
|||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 120 aaacgatgatgggagtgttgttgctccctcccctgcactgcctcttccctgg---ctccg 176
Query: 174 atcccccaccgt 185
||||||||||||
Sbjct: 177 atcccccaccgt 188
>48975_osa-miR408:pmrd
Length = 213
Score = 81.8 bits (41), Expect = 2e-16
Identities = 41/41 (100%)
Strand = Plus / Plus
Query: 129 tgttgttgctccctcccctgcactgcctcttccctggctcc 169
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 136 tgttgttgctccctcccctgcactgcctcttccctggctcc 176
Score = 50.1 bits (25), Expect = 6e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 30 aggcagagcatgggatggggccatcaaca 58
||||||||||||||||||||| |||||||
Sbjct: 39 aggcagagcatgggatggggctatcaaca 67
>54648_sof-miR408c:pmrd
Length = 286
Score = 75.8 bits (38), Expect = 1e-14
Identities = 41/42 (97%)
Strand = Plus / Plus
Query: 128 gtgttgttgctccctcccctgcactgcctcttccctggctcc 169
||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 229 gtgttgttgcttcctcccctgcactgcctcttccctggctcc 270
Score = 61.9 bits (31), Expect = 2e-10
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 30 aggcagagcatgggatggggccatcaacaaa 60
|||||||||||||||||||||||||||||||
Sbjct: 31 aggcagagcatgggatggggccatcaacaaa 61
>54647_sof-miR408b:pmrd
Length = 286
Score = 75.8 bits (38), Expect = 1e-14
Identities = 41/42 (97%)
Strand = Plus / Plus
Query: 128 gtgttgttgctccctcccctgcactgcctcttccctggctcc 169
||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 229 gtgttgttgcttcctcccctgcactgcctcttccctggctcc 270
Score = 61.9 bits (31), Expect = 2e-10
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 30 aggcagagcatgggatggggccatcaacaaa 60
|||||||||||||||||||||||||||||||
Sbjct: 31 aggcagagcatgggatggggccatcaacaaa 61
>54646_sof-miR408a:pmrd
Length = 283
Score = 73.8 bits (37), Expect = 4e-14
Identities = 40/41 (97%)
Strand = Plus / Plus
Query: 129 tgttgttgctccctcccctgcactgcctcttccctggctcc 169
|||||||||| ||||||||||||||||||||||||||||||
Sbjct: 227 tgttgttgcttcctcccctgcactgcctcttccctggctcc 267
Score = 54.0 bits (27), Expect = 4e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 30 aggcagagcatgggatggggccatcaacaaa 60
||||||||||||||||| |||||||||||||
Sbjct: 31 aggcagagcatgggatgaggccatcaacaaa 61
>54499_sbi-miR408:pmrd
Length = 205
Score = 71.9 bits (36), Expect = 2e-13
Identities = 39/40 (97%)
Strand = Plus / Plus
Query: 128 gtgttgttgctccctcccctgcactgcctcttccctggct 167
||||||||||| ||||||||||||||||||||||||||||
Sbjct: 166 gtgttgttgcttcctcccctgcactgcctcttccctggct 205
Score = 60.0 bits (30), Expect = 6e-10
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 30 aggcagagcatgggatggggccatcaacaa 59
||||||||||||||||||||||||||||||
Sbjct: 10 aggcagagcatgggatggggccatcaacaa 39
>54649_sof-miR408d:pmrd
Length = 215
Score = 67.9 bits (34), Expect = 3e-12
Identities = 40/42 (95%)
Strand = Plus / Plus
Query: 128 gtgttgttgctccctcccctgcactgcctcttccctggctcc 169
||||||||||| || |||||||||||||||||||||||||||
Sbjct: 158 gtgttgttgcttccacccctgcactgcctcttccctggctcc 199
Score = 61.9 bits (31), Expect = 2e-10
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 30 aggcagagcatgggatggggccatcaacaaa 60
|||||||||||||||||||||||||||||||
Sbjct: 31 aggcagagcatgggatggggccatcaacaaa 61
>54690_tae-miR408:pmrd
Length = 187
Score = 65.9 bits (33), Expect = 1e-11
Identities = 40/41 (97%), Gaps = 1/41 (2%)
Strand = Plus / Plus
Query: 129 tgttgttgctccctcccctgcactgcctcttccctggctcc 169
||||||||||||||||| |||||||||||||||||||||||
Sbjct: 120 tgttgttgctccctccc-tgcactgcctcttccctggctcc 159
>54650_sof-miR408e:pmrd
Length = 283
Score = 54.0 bits (27), Expect = 4e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 30 aggcagagcatgggatggggccatcaacaaa 60
||||||||||||||||| |||||||||||||
Sbjct: 31 aggcagagcatgggatgaggccatcaacaaa 61
Score = 50.1 bits (25), Expect = 6e-07
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 129 tgttgttgctccctcccctgcactgcctcttccctggctcc 169
|||||||||| || |||||||||| |||||||||||||||
Sbjct: 227 tgttgttgcttacttccctgcactgactcttccctggctcc 267
>54389_rco-miR408:pmrd
Length = 129
Score = 50.1 bits (25), Expect = 6e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 143 cccctgcactgcctcttccctggct 167
|||||||||||||||||||||||||
Sbjct: 87 cccctgcactgcctcttccctggct 111
>48428_cpt-miR408:pmrd
Length = 100
Score = 50.1 bits (25), Expect = 6e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 140 cctcccctgcactgcctcttccctggctc 168
|||||| ||||||||||||||||||||||
Sbjct: 64 cctcccatgcactgcctcttccctggctc 92
>48142_ath-miRf11042-akr:pmrd
Length = 99
Score = 46.1 bits (23), Expect = 9e-06
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 147 tgcactgcctcttccctggctcc 169
|||||||||||||||||||||||
Sbjct: 25 tgcactgcctcttccctggctcc 3
>47031_ath-miR408:pmrd
Length = 218
Score = 46.1 bits (23), Expect = 9e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 147 tgcactgcctcttccctggctcc 169
|||||||||||||||||||||||
Sbjct: 121 tgcactgcctcttccctggctcc 143
>54892_vvi-miR408:pmrd
Length = 107
Score = 44.1 bits (22), Expect = 4e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 147 tgcactgcctcttccctggctc 168
||||||||||||||||||||||
Sbjct: 78 tgcactgcctcttccctggctc 99
>51566_pta-miR408:pmrd
Length = 86
Score = 44.1 bits (22), Expect = 4e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 147 tgcactgcctcttccctggctc 168
||||||||||||||||||||||
Sbjct: 65 tgcactgcctcttccctggctc 86
>54585_smo-miR408:pmrd
Length = 109
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 147 tgcactgcctcttccctggct 167
|||||||||||||||||||||
Sbjct: 77 tgcactgcctcttccctggct 97
>51762_ptc-miR408:pmrd
Length = 105
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 147 tgcactgcctcttccctggct 167
|||||||||||||||||||||
Sbjct: 77 tgcactgcctcttccctggct 97
>51397_ppt-miR408b:pmrd
Length = 144
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 147 tgcactgcctcttccctggct 167
|||||||||||||||||||||
Sbjct: 94 tgcactgcctcttccctggct 114
>51347_ppe-miR408:pmrd
Length = 105
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 147 tgcactgcctcttccctggct 167
|||||||||||||||||||||
Sbjct: 76 tgcactgcctcttccctggct 96
>46892_aqc-miR408:pmrd
Length = 87
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 147 tgcactgcctcttccctggct 167
|||||||||||||||||||||
Sbjct: 21 tgcactgcctcttccctggct 1
