miRNEST 2.0, an integrative microRNA resource :: BLAST
>55104_zma-miR408:pmrd
Length = 191
Score = 244 bits (123), Expect = 2e-65
Identities = 163/175 (93%), Gaps = 6/175 (3%)
Strand = Plus / Plus
Query: 1 ttttgatttggagacagggatgaggcagagcatgggatggggctatcaacaaagtggagg 60
|||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||
Sbjct: 9 ttttgatttggagacagggatgagacagagcatgggatggggccatcaacaaagtggagg 68
Query: 61 gactagcttgtgaggcagaaagaaggtgccagt---ggt---tccctggcgaaacgatga 114
|||||||||| |||||||||||||||||||||| ||| |||| || ||||||||||
Sbjct: 69 gactagcttgcgaggcagaaagaaggtgccagtgccggtgcctccccggtgaaacgatga 128
Query: 115 tggcagtgttgttgctccctcccctgcactgcctcttccctggctccgatccccc 169
||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129 tgggagtgttgttgctccctcccctgcactgcctcttccctggctccgatccccc 183
>54648_sof-miR408c:pmrd
Length = 286
Score = 83.8 bits (42), Expect = 4e-17
Identities = 45/46 (97%)
Strand = Plus / Plus
Query: 8 ttggagacagggatgaggcagagcatgggatggggctatcaacaaa 53
|||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 16 ttggagacagggatgaggcagagcatgggatggggccatcaacaaa 61
Score = 75.8 bits (38), Expect = 9e-15
Identities = 41/42 (97%)
Strand = Plus / Plus
Query: 120 gtgttgttgctccctcccctgcactgcctcttccctggctcc 161
||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 229 gtgttgttgcttcctcccctgcactgcctcttccctggctcc 270
>54647_sof-miR408b:pmrd
Length = 286
Score = 83.8 bits (42), Expect = 4e-17
Identities = 45/46 (97%)
Strand = Plus / Plus
Query: 8 ttggagacagggatgaggcagagcatgggatggggctatcaacaaa 53
|||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 16 ttggagacagggatgaggcagagcatgggatggggccatcaacaaa 61
Score = 75.8 bits (38), Expect = 9e-15
Identities = 41/42 (97%)
Strand = Plus / Plus
Query: 120 gtgttgttgctccctcccctgcactgcctcttccctggctcc 161
||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 229 gtgttgttgcttcctcccctgcactgcctcttccctggctcc 270
>48975_osa-miR408:pmrd
Length = 213
Score = 83.8 bits (42), Expect = 4e-17
Identities = 42/42 (100%)
Strand = Plus / Plus
Query: 10 ggagacagggatgaggcagagcatgggatggggctatcaaca 51
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26 ggagacagggatgaggcagagcatgggatggggctatcaaca 67
Score = 81.8 bits (41), Expect = 2e-16
Identities = 41/41 (100%)
Strand = Plus / Plus
Query: 121 tgttgttgctccctcccctgcactgcctcttccctggctcc 161
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 136 tgttgttgctccctcccctgcactgcctcttccctggctcc 176
>54650_sof-miR408e:pmrd
Length = 283
Score = 75.8 bits (38), Expect = 9e-15
Identities = 44/46 (95%)
Strand = Plus / Plus
Query: 8 ttggagacagggatgaggcagagcatgggatggggctatcaacaaa 53
|||||||||||||||||||||||||||||||| ||| |||||||||
Sbjct: 16 ttggagacagggatgaggcagagcatgggatgaggccatcaacaaa 61
Score = 50.1 bits (25), Expect = 5e-07
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 121 tgttgttgctccctcccctgcactgcctcttccctggctcc 161
|||||||||| || |||||||||| |||||||||||||||
Sbjct: 227 tgttgttgcttacttccctgcactgactcttccctggctcc 267
>54649_sof-miR408d:pmrd
Length = 215
Score = 75.8 bits (38), Expect = 9e-15
Identities = 44/46 (95%)
Strand = Plus / Plus
Query: 8 ttggagacagggatgaggcagagcatgggatggggctatcaacaaa 53
||||||||||||| |||||||||||||||||||||| |||||||||
Sbjct: 16 ttggagacagggacgaggcagagcatgggatggggccatcaacaaa 61
Score = 67.9 bits (34), Expect = 2e-12
Identities = 40/42 (95%)
Strand = Plus / Plus
Query: 120 gtgttgttgctccctcccctgcactgcctcttccctggctcc 161
||||||||||| || |||||||||||||||||||||||||||
Sbjct: 158 gtgttgttgcttccacccctgcactgcctcttccctggctcc 199
>54646_sof-miR408a:pmrd
Length = 283
Score = 75.8 bits (38), Expect = 9e-15
Identities = 44/46 (95%)
Strand = Plus / Plus
Query: 8 ttggagacagggatgaggcagagcatgggatggggctatcaacaaa 53
|||||||||||||||||||||||||||||||| ||| |||||||||
Sbjct: 16 ttggagacagggatgaggcagagcatgggatgaggccatcaacaaa 61
Score = 73.8 bits (37), Expect = 4e-14
Identities = 40/41 (97%)
Strand = Plus / Plus
Query: 121 tgttgttgctccctcccctgcactgcctcttccctggctcc 161
|||||||||| ||||||||||||||||||||||||||||||
Sbjct: 227 tgttgttgcttcctcccctgcactgcctcttccctggctcc 267
>54499_sbi-miR408:pmrd
Length = 205
Score = 71.9 bits (36), Expect = 1e-13
Identities = 39/40 (97%)
Strand = Plus / Plus
Query: 120 gtgttgttgctccctcccctgcactgcctcttccctggct 159
||||||||||| ||||||||||||||||||||||||||||
Sbjct: 166 gtgttgttgcttcctcccctgcactgcctcttccctggct 205
Score = 61.9 bits (31), Expect = 1e-10
Identities = 37/39 (94%)
Strand = Plus / Plus
Query: 14 acagggatgaggcagagcatgggatggggctatcaacaa 52
||||||| |||||||||||||||||||||| ||||||||
Sbjct: 1 acagggacgaggcagagcatgggatggggccatcaacaa 39
>54690_tae-miR408:pmrd
Length = 187
Score = 65.9 bits (33), Expect = 9e-12
Identities = 40/41 (97%), Gaps = 1/41 (2%)
Strand = Plus / Plus
Query: 121 tgttgttgctccctcccctgcactgcctcttccctggctcc 161
||||||||||||||||| |||||||||||||||||||||||
Sbjct: 120 tgttgttgctccctccc-tgcactgcctcttccctggctcc 159
Score = 40.1 bits (20), Expect = 5e-04
Identities = 38/44 (86%)
Strand = Plus / Plus
Query: 10 ggagacagggatgaggcagagcatgggatggggctatcaacaaa 53
||||||||||||| |||||||| |||||| ||| | |||||||
Sbjct: 24 ggagacagggatggagcagagcaagggatgaggcaagcaacaaa 67
>54389_rco-miR408:pmrd
Length = 129
Score = 50.1 bits (25), Expect = 5e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 135 cccctgcactgcctcttccctggct 159
|||||||||||||||||||||||||
Sbjct: 87 cccctgcactgcctcttccctggct 111
>48428_cpt-miR408:pmrd
Length = 100
Score = 50.1 bits (25), Expect = 5e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 132 cctcccctgcactgcctcttccctggctc 160
|||||| ||||||||||||||||||||||
Sbjct: 64 cctcccatgcactgcctcttccctggctc 92
>48142_ath-miRf11042-akr:pmrd
Length = 99
Score = 46.1 bits (23), Expect = 8e-06
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 139 tgcactgcctcttccctggctcc 161
|||||||||||||||||||||||
Sbjct: 25 tgcactgcctcttccctggctcc 3
>47031_ath-miR408:pmrd
Length = 218
Score = 46.1 bits (23), Expect = 8e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 139 tgcactgcctcttccctggctcc 161
|||||||||||||||||||||||
Sbjct: 121 tgcactgcctcttccctggctcc 143
>54892_vvi-miR408:pmrd
Length = 107
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 139 tgcactgcctcttccctggctc 160
||||||||||||||||||||||
Sbjct: 78 tgcactgcctcttccctggctc 99
>51566_pta-miR408:pmrd
Length = 86
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 139 tgcactgcctcttccctggctc 160
||||||||||||||||||||||
Sbjct: 65 tgcactgcctcttccctggctc 86
>54585_smo-miR408:pmrd
Length = 109
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 139 tgcactgcctcttccctggct 159
|||||||||||||||||||||
Sbjct: 77 tgcactgcctcttccctggct 97
>51762_ptc-miR408:pmrd
Length = 105
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 139 tgcactgcctcttccctggct 159
|||||||||||||||||||||
Sbjct: 77 tgcactgcctcttccctggct 97
>51397_ppt-miR408b:pmrd
Length = 144
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 139 tgcactgcctcttccctggct 159
|||||||||||||||||||||
Sbjct: 94 tgcactgcctcttccctggct 114
>51347_ppe-miR408:pmrd
Length = 105
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 139 tgcactgcctcttccctggct 159
|||||||||||||||||||||
Sbjct: 76 tgcactgcctcttccctggct 96
>46892_aqc-miR408:pmrd
Length = 87
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 139 tgcactgcctcttccctggct 159
|||||||||||||||||||||
Sbjct: 21 tgcactgcctcttccctggct 1
Score = 40.1 bits (20), Expect = 5e-04
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 12 agacagggatgaggcagagcatgg 35
||||| ||||||||||||||||||
Sbjct: 85 agacaaggatgaggcagagcatgg 62
