miRNEST 2.0, an integrative microRNA resource :: BLAST
>55104_zma-miR408:pmrd
Length = 191
Score = 79.8 bits (40), Expect = 9e-16
Identities = 40/40 (100%)
Strand = Plus / Plus
Query: 159 gttgttgctccctcccctgcactgcctcttccctggctcc 198
||||||||||||||||||||||||||||||||||||||||
Sbjct: 136 gttgttgctccctcccctgcactgcctcttccctggctcc 175
Score = 46.1 bits (23), Expect = 1e-05
Identities = 39/43 (90%), Gaps = 1/43 (2%)
Strand = Plus / Plus
Query: 48 ggagacagggacgaggcagagcatgggtagggggccatcaaca 90
||||||||||| ||| ||||||||||| | |||||||||||||
Sbjct: 18 ggagacagggatgagacagagcatggg-atggggccatcaaca 59
>48975_osa-miR408:pmrd
Length = 213
Score = 79.8 bits (40), Expect = 9e-16
Identities = 40/40 (100%)
Strand = Plus / Plus
Query: 159 gttgttgctccctcccctgcactgcctcttccctggctcc 198
||||||||||||||||||||||||||||||||||||||||
Sbjct: 137 gttgttgctccctcccctgcactgcctcttccctggctcc 176
Score = 50.1 bits (25), Expect = 8e-07
Identities = 41/45 (91%), Gaps = 1/45 (2%)
Strand = Plus / Plus
Query: 48 ggagacagggacgaggcagagcatgggtagggggccatcaacaga 92
||||||||||| ||||||||||||||| | ||||| |||||||||
Sbjct: 26 ggagacagggatgaggcagagcatggg-atggggctatcaacaga 69
>54648_sof-miR408c:pmrd
Length = 286
Score = 77.8 bits (39), Expect = 4e-15
Identities = 45/47 (95%)
Strand = Plus / Plus
Query: 159 gttgttgctccctcccctgcactgcctcttccctggctcctcaccgt 205
||||||||| |||||||||||||||||||||||||||||| ||||||
Sbjct: 231 gttgttgcttcctcccctgcactgcctcttccctggctccccaccgt 277
Score = 56.0 bits (28), Expect = 1e-08
Identities = 44/48 (91%), Gaps = 1/48 (2%)
Strand = Plus / Plus
Query: 48 ggagacagggacgaggcagagcatgggtagggggccatcaacagaatt 95
||||||||||| ||||||||||||||| | ||||||||||||| ||||
Sbjct: 18 ggagacagggatgaggcagagcatggg-atggggccatcaacaaaatt 64
Score = 48.1 bits (24), Expect = 3e-06
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 105 atttctgtttgctcgctcacaaaatggaggga 136
||||||||||||| |||||||||| |||||||
Sbjct: 98 atttctgtttgcttgctcacaaaacggaggga 129
>54647_sof-miR408b:pmrd
Length = 286
Score = 77.8 bits (39), Expect = 4e-15
Identities = 45/47 (95%)
Strand = Plus / Plus
Query: 159 gttgttgctccctcccctgcactgcctcttccctggctcctcaccgt 205
||||||||| |||||||||||||||||||||||||||||| ||||||
Sbjct: 231 gttgttgcttcctcccctgcactgcctcttccctggctccccaccgt 277
Score = 56.0 bits (28), Expect = 1e-08
Identities = 44/48 (91%), Gaps = 1/48 (2%)
Strand = Plus / Plus
Query: 48 ggagacagggacgaggcagagcatgggtagggggccatcaacagaatt 95
||||||||||| ||||||||||||||| | ||||||||||||| ||||
Sbjct: 18 ggagacagggatgaggcagagcatggg-atggggccatcaacaaaatt 64
>54646_sof-miR408a:pmrd
Length = 283
Score = 77.8 bits (39), Expect = 4e-15
Identities = 45/47 (95%)
Strand = Plus / Plus
Query: 159 gttgttgctccctcccctgcactgcctcttccctggctcctcaccgt 205
||||||||| |||||||||||||||||||||||||||||| ||||||
Sbjct: 228 gttgttgcttcctcccctgcactgcctcttccctggctccccaccgt 274
Score = 48.1 bits (24), Expect = 3e-06
Identities = 43/48 (89%), Gaps = 1/48 (2%)
Strand = Plus / Plus
Query: 48 ggagacagggacgaggcagagcatgggtagggggccatcaacagaatt 95
||||||||||| ||||||||||||||| | | ||||||||||| ||||
Sbjct: 18 ggagacagggatgaggcagagcatggg-atgaggccatcaacaaaatt 64
Score = 48.1 bits (24), Expect = 3e-06
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 105 atttctgtttgctcgctcacaaaatggaggga 136
||||||||||||| |||||||||| |||||||
Sbjct: 98 atttctgtttgcttgctcacaaaacggaggga 129
>54649_sof-miR408d:pmrd
Length = 215
Score = 71.9 bits (36), Expect = 2e-13
Identities = 52/56 (92%), Gaps = 1/56 (1%)
Strand = Plus / Plus
Query: 40 gtttgatcggagacagggacgaggcagagcatgggtagggggccatcaacagaatt 95
||||||| ||||||||||||||||||||||||||| | ||||||||||||| ||||
Sbjct: 10 gtttgattggagacagggacgaggcagagcatggg-atggggccatcaacaaaatt 64
Score = 69.9 bits (35), Expect = 9e-13
Identities = 44/47 (93%)
Strand = Plus / Plus
Query: 159 gttgttgctccctcccctgcactgcctcttccctggctcctcaccgt 205
||||||||| || ||||||||||||||||||||||||||| ||||||
Sbjct: 160 gttgttgcttccacccctgcactgcctcttccctggctccccaccgt 206
>54499_sbi-miR408:pmrd
Length = 205
Score = 67.9 bits (34), Expect = 3e-12
Identities = 37/38 (97%)
Strand = Plus / Plus
Query: 159 gttgttgctccctcccctgcactgcctcttccctggct 196
||||||||| ||||||||||||||||||||||||||||
Sbjct: 168 gttgttgcttcctcccctgcactgcctcttccctggct 205
Score = 54.0 bits (27), Expect = 5e-08
Identities = 37/39 (94%), Gaps = 1/39 (2%)
Strand = Plus / Plus
Query: 52 acagggacgaggcagagcatgggtagggggccatcaaca 90
||||||||||||||||||||||| | |||||||||||||
Sbjct: 1 acagggacgaggcagagcatggg-atggggccatcaaca 38
>54690_tae-miR408:pmrd
Length = 187
Score = 63.9 bits (32), Expect = 5e-11
Identities = 39/40 (97%), Gaps = 1/40 (2%)
Strand = Plus / Plus
Query: 159 gttgttgctccctcccctgcactgcctcttccctggctcc 198
|||||||||||||||| |||||||||||||||||||||||
Sbjct: 121 gttgttgctccctccc-tgcactgcctcttccctggctcc 159
>54650_sof-miR408e:pmrd
Length = 283
Score = 54.0 bits (27), Expect = 5e-08
Identities = 42/47 (89%)
Strand = Plus / Plus
Query: 159 gttgttgctccctcccctgcactgcctcttccctggctcctcaccgt 205
||||||||| || |||||||||| ||||||||||||||| ||||||
Sbjct: 228 gttgttgcttacttccctgcactgactcttccctggctccccaccgt 274
Score = 48.1 bits (24), Expect = 3e-06
Identities = 43/48 (89%), Gaps = 1/48 (2%)
Strand = Plus / Plus
Query: 48 ggagacagggacgaggcagagcatgggtagggggccatcaacagaatt 95
||||||||||| ||||||||||||||| | | ||||||||||| ||||
Sbjct: 18 ggagacagggatgaggcagagcatggg-atgaggccatcaacaaaatt 64
>54389_rco-miR408:pmrd
Length = 129
Score = 50.1 bits (25), Expect = 8e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 172 cccctgcactgcctcttccctggct 196
|||||||||||||||||||||||||
Sbjct: 87 cccctgcactgcctcttccctggct 111
>48428_cpt-miR408:pmrd
Length = 100
Score = 50.1 bits (25), Expect = 8e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 169 cctcccctgcactgcctcttccctggctc 197
|||||| ||||||||||||||||||||||
Sbjct: 64 cctcccatgcactgcctcttccctggctc 92
>48142_ath-miRf11042-akr:pmrd
Length = 99
Score = 46.1 bits (23), Expect = 1e-05
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 176 tgcactgcctcttccctggctcc 198
|||||||||||||||||||||||
Sbjct: 25 tgcactgcctcttccctggctcc 3
>47031_ath-miR408:pmrd
Length = 218
Score = 46.1 bits (23), Expect = 1e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 176 tgcactgcctcttccctggctcc 198
|||||||||||||||||||||||
Sbjct: 121 tgcactgcctcttccctggctcc 143
>54892_vvi-miR408:pmrd
Length = 107
Score = 44.1 bits (22), Expect = 5e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 176 tgcactgcctcttccctggctc 197
||||||||||||||||||||||
Sbjct: 78 tgcactgcctcttccctggctc 99
>51566_pta-miR408:pmrd
Length = 86
Score = 44.1 bits (22), Expect = 5e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 176 tgcactgcctcttccctggctc 197
||||||||||||||||||||||
Sbjct: 65 tgcactgcctcttccctggctc 86
>54585_smo-miR408:pmrd
Length = 109
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 176 tgcactgcctcttccctggct 196
|||||||||||||||||||||
Sbjct: 77 tgcactgcctcttccctggct 97
>51762_ptc-miR408:pmrd
Length = 105
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 176 tgcactgcctcttccctggct 196
|||||||||||||||||||||
Sbjct: 77 tgcactgcctcttccctggct 97
>51397_ppt-miR408b:pmrd
Length = 144
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 176 tgcactgcctcttccctggct 196
|||||||||||||||||||||
Sbjct: 94 tgcactgcctcttccctggct 114
>51347_ppe-miR408:pmrd
Length = 105
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 176 tgcactgcctcttccctggct 196
|||||||||||||||||||||
Sbjct: 76 tgcactgcctcttccctggct 96
>46892_aqc-miR408:pmrd
Length = 87
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 176 tgcactgcctcttccctggct 196
|||||||||||||||||||||
Sbjct: 21 tgcactgcctcttccctggct 1
