miRNEST 2.0, an integrative microRNA resource :: BLAST
>54628_sof-miR159a:pmrd
Length = 265
Score = 226 bits (114), Expect = 7e-60
Identities = 220/252 (87%), Gaps = 15/252 (5%)
Strand = Plus / Plus
Query: 10 ttggatttgaagcggagctcctctcattccaatgaagggtccttccgaagggtggttccg 69
|||||||||||||||||||||| |||||||||||||||| | ||| ||||||| ||||||
Sbjct: 9 ttggatttgaagcggagctcctatcattccaatgaagggccgttctgaagggttgttccg 68
Query: 70 ctgctcgttcatggttcccactatcctatctcatccatgcttgtgtgtct------tcga 123
||||||||||||||||||||||||||||||||||| ||| ||||||| | ||||
Sbjct: 69 ctgctcgttcatggttcccactatcctatctcatc-atgtatgtgtgtatgtattttcga 127
Query: 124 gaggaagcggaagagat------tcctg-tggtcgccttttgagataggcttgtggtttg 176
|||| || || ||| | || || |||||| |||| |||||||||||||||||||
Sbjct: 128 gagggaggagaggagctagactctcatggtggtcgtcttt-gagataggcttgtggtttg 186
Query: 177 catgaccgaggagctgcaccgaccccgtgctggccgctctttggattgaagggagctctg 236
||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||
Sbjct: 187 catgaccgaggagctgcaccgtccccttgctggccgctctttggattgaagggagctctg 246
Query: 237 catcctgatcca 248
||||||||||||
Sbjct: 247 catcctgatcca 258
>54632_sof-miR159e:pmrd
Length = 264
Score = 192 bits (97), Expect = 9e-50
Identities = 206/239 (86%), Gaps = 15/239 (6%)
Strand = Plus / Plus
Query: 10 ttggatttgaagcggagctcctctcattccaatgaagggtccttccgaagggtggttccg 69
|||||||||||||||||||||| |||||||||||||||| | ||| ||||||||||||||
Sbjct: 8 ttggatttgaagcggagctcctatcattccaatgaagggccgttctgaagggtggttccg 67
Query: 70 ctgctcgttcatggttcccactatcctatctcatccatgcttgtgtg------tcttcga 123
|||||||||||||||||||||||||||||||||| |||| |||||| | |||||
Sbjct: 68 ctgctcgttcatggttcccactatcctatctcat-catgtatgtgtgtatgtattttcga 126
Query: 124 gaggaagcggaag----agattc---ctgtggtcgccttttgagataggcttgtggtttg 176
|||| || || | ||| || | ||||||| | ||||||||||||||||||||||
Sbjct: 127 gagggaggagaggagctagactctcacggtggtcgtc-tttgagataggcttgtggtttg 185
Query: 177 catgaccgaggagctgcaccgaccccgtgctggccgctctttggattgaagggagctct 235
||||||||| ||||||||||| |||| ||||||||||||||||||||||| ||||||||
Sbjct: 186 catgaccgaagagctgcaccgtccccttgctggccgctctttggattgaaaggagctct 244
>54930_zma-miR159a:pmrd
Length = 246
Score = 178 bits (90), Expect = 1e-45
Identities = 96/98 (97%)
Strand = Plus / Plus
Query: 155 tttgagataggcttgtggtttgcatgaccgaggagctgcaccgaccccgtgctggccgct 214
||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||
Sbjct: 146 tttgagataggcttgtggtttgcatgaccgaggagctgcaccgcccccttgctggccgct 205
Query: 215 ctttggattgaagggagctctgcatcctgatccacccc 252
||||||||||||||||||||||||||||||||||||||
Sbjct: 206 ctttggattgaagggagctctgcatcctgatccacccc 243
Score = 163 bits (82), Expect = 8e-41
Identities = 98/102 (96%), Gaps = 1/102 (0%)
Strand = Plus / Plus
Query: 4 gatgctttggatttgaagcggagctcctctcattccaatgaagggtccttccgaaggg-t 62
|||||||||| ||||||||||||||||| |||||||||||||||||| |||||||||| |
Sbjct: 3 gatgctttgggtttgaagcggagctcctatcattccaatgaagggtcgttccgaagggct 62
Query: 63 ggttccgctgctcgttcatggttcccactatcctatctcatc 104
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 63 ggttccgctgctcgttcatggttcccactatcctatctcatc 104
>54629_sof-miR159b:pmrd
Length = 266
Score = 163 bits (82), Expect = 8e-41
Identities = 88/90 (97%)
Strand = Plus / Plus
Query: 155 tttgagataggcttgtggtttgcatgaccgaggagctgcaccgaccccgtgctggccgct 214
||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||
Sbjct: 166 tttgagataggcttgtggtttgcatgaccgaggagctgcaccgtccccttgctggccgct 225
Query: 215 ctttggattgaagggagctctgcatcctga 244
||||||||||||||||||||||||||||||
Sbjct: 226 ctttggattgaagggagctctgcatcctga 255
Score = 157 bits (79), Expect = 5e-39
Identities = 91/95 (95%)
Strand = Plus / Plus
Query: 10 ttggatttgaagcggagctcctctcattccaatgaagggtccttccgaagggtggttccg 69
|||||||||||||||||||||| |||||||||||||||| | ||| ||||||||||||||
Sbjct: 9 ttggatttgaagcggagctcctatcattccaatgaagggccgttctgaagggtggttccg 68
Query: 70 ctgctcgttcatggttcccactatcctatctcatc 104
|||||||||||||||||||||||||||||||||||
Sbjct: 69 ctgctcgttcatggttcccactatcctatctcatc 103
>54631_sof-miR159d:pmrd
Length = 265
Score = 151 bits (76), Expect = 3e-37
Identities = 88/92 (95%)
Strand = Plus / Plus
Query: 157 tgagataggcttgtggtttgcatgaccgaggagctgcaccgaccccgtgctggccgctct 216
||||||| ||||||||||||||||||||| ||||||||||| |||| |||||||||||||
Sbjct: 167 tgagatacgcttgtggtttgcatgaccgatgagctgcaccgtccccttgctggccgctct 226
Query: 217 ttggattgaagggagctctgcatcctgatcca 248
||||||||||||||||||||||||||||||||
Sbjct: 227 ttggattgaagggagctctgcatcctgatcca 258
Score = 149 bits (75), Expect = 1e-36
Identities = 90/95 (94%)
Strand = Plus / Plus
Query: 10 ttggatttgaagcggagctcctctcattccaatgaagggtccttccgaagggtggttccg 69
|||||||||||||||||||||| |||||||||||||||| | ||| ||||||| ||||||
Sbjct: 9 ttggatttgaagcggagctcctatcattccaatgaagggccgttctgaagggttgttccg 68
Query: 70 ctgctcgttcatggttcccactatcctatctcatc 104
|||||||||||||||||||||||||||||||||||
Sbjct: 69 ctgctcgttcatggttcccactatcctatctcatc 103
>51338_pgl-miR159:pmrd
Length = 226
Score = 137 bits (69), Expect = 5e-33
Identities = 78/81 (96%)
Strand = Plus / Plus
Query: 156 ttgagataggcttgtggtttgcatgaccgaggagctgcaccgaccccgtgctggccgctc 215
||||||||||||||||| |||||||||||||||||||||||| |||| ||||||||||||
Sbjct: 146 ttgagataggcttgtggcttgcatgaccgaggagctgcaccgtccccttgctggccgctc 205
Query: 216 tttggattgaagggagctctg 236
|||||||||||||||||||||
Sbjct: 206 tttggattgaagggagctctg 226
Score = 69.9 bits (35), Expect = 9e-13
Identities = 35/35 (100%)
Strand = Plus / Plus
Query: 69 gctgctcgttcatggttcccactatcctatctcat 103
|||||||||||||||||||||||||||||||||||
Sbjct: 49 gctgctcgttcatggttcccactatcctatctcat 83
>54392_sar-miR159:pmrd
Length = 175
Score = 101 bits (51), Expect = 3e-22
Identities = 72/79 (91%)
Strand = Plus / Plus
Query: 158 gagataggcttgtggtttgcatgaccgaggagctgcaccgaccccgtgctggccgctctt 217
||||||||| ||||| ||||||||||||||||| ||| || |||| |||||||||||||
Sbjct: 97 gagataggcctgtggcttgcatgaccgaggagccgcatcgtcccctcgctggccgctctt 156
Query: 218 tggattgaagggagctctg 236
|||||||||||||||||||
Sbjct: 157 tggattgaagggagctctg 175
Score = 65.9 bits (33), Expect = 1e-11
Identities = 68/77 (88%), Gaps = 2/77 (2%)
Strand = Plus / Plus
Query: 23 ggagctcctctcattccaatgaagggtccttcc-gaaggg-tggttccgctgctcgttca 80
||||||||| ||||||||||||| |||| | | |||||| |||| | ||||||||||||
Sbjct: 2 ggagctcctatcattccaatgaaaggtcttgctagaaggggtggtacagctgctcgttca 61
Query: 81 tggttcccactatccta 97
|||||||||||||||||
Sbjct: 62 tggttcccactatccta 78
>48820_osa-miR159b:pmrd
Length = 188
Score = 97.6 bits (49), Expect = 4e-21
Identities = 79/89 (88%)
Strand = Plus / Plus
Query: 158 gagataggcttgtggtttgcatgaccgaggagctgcaccgaccccgtgctggccgctctt 217
|||||||||||||||||||||||||| |||||| | | | || || ||||| || |||||
Sbjct: 100 gagataggcttgtggtttgcatgaccaaggagccgaatcaactccttgctgaccactctt 159
Query: 218 tggattgaagggagctctgcatcctgatc 246
||||||||||||||||||||||| |||||
Sbjct: 160 tggattgaagggagctctgcatcttgatc 188
Score = 69.9 bits (35), Expect = 9e-13
Identities = 74/87 (85%)
Strand = Plus / Plus
Query: 17 tgaagcggagctcctctcattccaatgaagggtccttccgaagggtggttccgctgctcg 76
||||| ||||||||| || |||||||||| ||| || |||||||| | | |||||| |
Sbjct: 6 tgaagtggagctcctttcgttccaatgaaaggtttatctgaagggtgatacagctgcttg 65
Query: 77 ttcatggttcccactatcctatctcat 103
||||||||||||||||| |||||||||
Sbjct: 66 ttcatggttcccactattctatctcat 92
>54931_zma-miR159b:pmrd
Length = 221
Score = 91.7 bits (46), Expect = 2e-19
Identities = 78/86 (90%), Gaps = 2/86 (2%)
Strand = Plus / Plus
Query: 156 ttgagataggcttgtggtttgcatgaccgaggagctgcaccgaccccgt-gctggccgct 214
||||||| ||||||||||||||||||||||||||||||| || |||| | | || |||||
Sbjct: 122 ttgagatgggcttgtggtttgcatgaccgaggagctgca-cgtccccttcgttgaccgct 180
Query: 215 ctttggattgaagggagctctgcatc 240
|||||||||||||||||||||||||
Sbjct: 181 gtttggattgaagggagctctgcatc 206
Score = 60.0 bits (30), Expect = 9e-10
Identities = 42/46 (91%)
Strand = Plus / Plus
Query: 59 gggtggttccgctgctcgttcatggttcccactatcctatctcatc 104
||||||| | ||||||||||||||||||||||| ||| ||||||||
Sbjct: 58 gggtggtacagctgctcgttcatggttcccactgtcccatctcatc 103
>48657_hvv-miR159b:pmrd
Length = 174
Score = 85.7 bits (43), Expect = 2e-17
Identities = 70/79 (88%)
Strand = Plus / Plus
Query: 158 gagataggcttgtggtttgcatgaccgaggagctgcaccgaccccgtgctggccgctctt 217
|||||||||||||||||||||||| |||||||| || ||| ||| |||| ||||| ||
Sbjct: 96 gagataggcttgtggtttgcatgatcgaggagccgcttcgatccctcgctgaccgctgtt 155
Query: 218 tggattgaagggagctctg 236
|||||||||||||||||||
Sbjct: 156 tggattgaagggagctctg 174
Score = 71.9 bits (36), Expect = 2e-13
Identities = 70/80 (87%), Gaps = 1/80 (1%)
Strand = Plus / Plus
Query: 23 ggagctcctctcattccaatgaagggtccttccgaagggtg-gttccgctgctcgttcat 81
||||||||| |||||||||||||||||| | ||||||| || | |||||| ||||||
Sbjct: 2 ggagctcctatcattccaatgaagggtctaccggaagggtttgtgcagctgcttgttcat 61
Query: 82 ggttcccactatcctatctc 101
||||||||||||||||||||
Sbjct: 62 ggttcccactatcctatctc 81
>54673_tae-miR159a:pmrd
Length = 177
Score = 83.8 bits (42), Expect = 6e-17
Identities = 72/82 (87%)
Strand = Plus / Plus
Query: 158 gagataggcttgtggtttgcatgaccgaggagctgcaccgaccccgtgctggccgctctt 217
|||| |||| ||||||||||||||||||||||| || ||| ||| |||| ||||| ||
Sbjct: 96 gagagaggcctgtggtttgcatgaccgaggagccgcttcgatccctcgctgaccgctgtt 155
Query: 218 tggattgaagggagctctgcat 239
||||||||||||||||||||||
Sbjct: 156 tggattgaagggagctctgcat 177
Score = 79.8 bits (40), Expect = 9e-16
Identities = 71/80 (88%), Gaps = 1/80 (1%)
Strand = Plus / Plus
Query: 23 ggagctcctctcattccaatgaagggtccttccgaagggtg-gttccgctgctcgttcat 81
||||||||| |||||||||||||||||| | ||||||| || | |||||||||||||
Sbjct: 3 ggagctcctatcattccaatgaagggtctaccggaagggtttgtgcagctgctcgttcat 62
Query: 82 ggttcccactatcctatctc 101
||||||||||||||||||||
Sbjct: 63 ggttcccactatcctatctc 82
>54934_zma-miR159e:pmrd
Length = 203
Score = 77.8 bits (39), Expect = 4e-15
Identities = 73/83 (87%), Gaps = 1/83 (1%)
Strand = Plus / Plus
Query: 156 ttgagataggcttgtggtttgcatgaccgaggagctgcaccgaccccgt-gctggccgct 214
||||||| |||||||||||||||||||||||||||||| || |||| | | || |||||
Sbjct: 121 ttgagatgggcttgtggtttgcatgaccgaggagctgcctcgtccccttcgttgaccgct 180
Query: 215 ctttggattgaagggagctctgc 237
|||||| |||||||||||||||
Sbjct: 181 gtttggagtgaagggagctctgc 203
Score = 60.0 bits (30), Expect = 9e-10
Identities = 42/46 (91%)
Strand = Plus / Plus
Query: 59 gggtggttccgctgctcgttcatggttcccactatcctatctcatc 104
||||||| | ||||||||||||||||||||||| ||| ||||||||
Sbjct: 40 gggtggtacagctgctcgttcatggttcccactgtcccatctcatc 85
>54937_zma-miR159m:pmrd
Length = 457
Score = 73.8 bits (37), Expect = 6e-14
Identities = 37/37 (100%)
Strand = Plus / Plus
Query: 216 tttggattgaagggagctctgcatcctgatccacccc 252
|||||||||||||||||||||||||||||||||||||
Sbjct: 1 tttggattgaagggagctctgcatcctgatccacccc 37
>54653_spr-miR159:pmrd
Length = 392
Score = 65.9 bits (33), Expect = 1e-11
Identities = 33/33 (100%)
Strand = Plus / Plus
Query: 216 tttggattgaagggagctctgcatcctgatcca 248
|||||||||||||||||||||||||||||||||
Sbjct: 1 tttggattgaagggagctctgcatcctgatcca 33
>54674_tae-miR159b:pmrd
Length = 255
Score = 56.0 bits (28), Expect = 1e-08
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 213 ctctttggattgaagggagctctgcatc 240
||||||||||||||||||||||||||||
Sbjct: 227 ctctttggattgaagggagctctgcatc 254
>48819_osa-miR159a:pmrd
Length = 272
Score = 56.0 bits (28), Expect = 1e-08
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 213 ctctttggattgaagggagctctgcatc 240
||||||||||||||||||||||||||||
Sbjct: 239 ctctttggattgaagggagctctgcatc 266
>48796_oru-miR159:pmrd
Length = 274
Score = 56.0 bits (28), Expect = 1e-08
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 213 ctctttggattgaagggagctctgcatc 240
||||||||||||||||||||||||||||
Sbjct: 239 ctctttggattgaagggagctctgcatc 266
>48656_hvv-miR159a:pmrd
Length = 303
Score = 54.0 bits (27), Expect = 5e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 216 tttggattgaagggagctctgcatcctgatc 246
||||||||||||||||||||||||| |||||
Sbjct: 1 tttggattgaagggagctctgcatcttgatc 31
>48825_osa-miR159m:pmrd
Length = 249
Score = 48.1 bits (24), Expect = 3e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 213 ctctttggattgaagggagctctg 236
||||||||||||||||||||||||
Sbjct: 226 ctctttggattgaagggagctctg 249
>46932_ath-miR159b:pmrd
Length = 196
Score = 46.1 bits (23), Expect = 1e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 214 tctttggattgaagggagctctgcatc 240
|||||||||||||||||||||| ||||
Sbjct: 166 tctttggattgaagggagctcttcatc 192
>54378_pvu-miR159:pmrd
Length = 174
Score = 44.1 bits (22), Expect = 5e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 214 tctttggattgaagggagctct 235
||||||||||||||||||||||
Sbjct: 151 tctttggattgaagggagctct 172
>54377_pvu-miR159:pmrd
Length = 174
Score = 44.1 bits (22), Expect = 5e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 214 tctttggattgaagggagctct 235
||||||||||||||||||||||
Sbjct: 151 tctttggattgaagggagctct 172
>48699_mtr-miR159a:pmrd
Length = 168
Score = 44.1 bits (22), Expect = 5e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 214 tctttggattgaagggagctct 235
||||||||||||||||||||||
Sbjct: 146 tctttggattgaagggagctct 167
>48539_gma-miR159a:pmrd
Length = 214
Score = 44.1 bits (22), Expect = 5e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 214 tctttggattgaagggagctct 235
||||||||||||||||||||||
Sbjct: 173 tctttggattgaagggagctct 194
>48395_bra-miR159a:pmrd
Length = 185
Score = 44.1 bits (22), Expect = 5e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 214 tctttggattgaagggagctct 235
||||||||||||||||||||||
Sbjct: 161 tctttggattgaagggagctct 182
>48339_bna-miR159:pmrd
Length = 183
Score = 44.1 bits (22), Expect = 5e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 214 tctttggattgaagggagctct 235
||||||||||||||||||||||
Sbjct: 159 tctttggattgaagggagctct 180
>46931_ath-miR159a:pmrd
Length = 184
Score = 44.1 bits (22), Expect = 5e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 214 tctttggattgaagggagctct 235
||||||||||||||||||||||
Sbjct: 161 tctttggattgaagggagctct 182
>48701_mtr-miR159c:pmrd
Length = 44
Score = 42.1 bits (21), Expect = 2e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 216 tttggattgaagggagctctgcatc 240
|||||||||||||||||||| ||||
Sbjct: 1 tttggattgaagggagctctacatc 25
>54777_vvi-miR159c:pmrd
Length = 190
Score = 40.1 bits (20), Expect = 8e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 216 tttggattgaagggagctct 235
||||||||||||||||||||
Sbjct: 160 tttggattgaagggagctct 179
>54540_sly-miR159:pmrd
Length = 177
Score = 40.1 bits (20), Expect = 8e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 216 tttggattgaagggagctct 235
||||||||||||||||||||
Sbjct: 157 tttggattgaagggagctct 176
>52093_ptc-miRf10271-akr:pmrd
Length = 174
Score = 40.1 bits (20), Expect = 8e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 216 tttggattgaagggagctct 235
||||||||||||||||||||
Sbjct: 149 tttggattgaagggagctct 168
>51604_ptc-miR159c:pmrd
Length = 183
Score = 40.1 bits (20), Expect = 8e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 216 tttggattgaagggagctct 235
||||||||||||||||||||
Sbjct: 154 tttggattgaagggagctct 173
>51603_ptc-miR159b:pmrd
Length = 187
Score = 40.1 bits (20), Expect = 8e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 216 tttggattgaagggagctct 235
||||||||||||||||||||
Sbjct: 158 tttggattgaagggagctct 177
>51602_ptc-miR159a:pmrd
Length = 183
Score = 40.1 bits (20), Expect = 8e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 216 tttggattgaagggagctct 235
||||||||||||||||||||
Sbjct: 154 tttggattgaagggagctct 173
>48728_mtr-miR319b:pmrd
Length = 42
Score = 40.1 bits (20), Expect = 8e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 217 ttggattgaagggagctctgcatc 240
||||||||||||||||||| ||||
Sbjct: 1 ttggattgaagggagctctacatc 24
>48686_ltu-miR159:pmrd
Length = 345
Score = 40.1 bits (20), Expect = 8e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 216 tttggattgaagggagctct 235
||||||||||||||||||||
Sbjct: 1 tttggattgaagggagctct 20
