miRNEST 2.0, an integrative microRNA resource :: BLAST
>54930_zma-miR159a:pmrd
Length = 246
Score = 440 bits (222), Expect = e-124
Identities = 243/248 (97%), Gaps = 4/248 (1%)
Strand = Plus / Plus
Query: 1 cgatgctttgggtttgaagcggagctcctatcattccaatgaagggtcgttccgaagggc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2 cgatgctttgggtttgaagcggagctcctatcattccaatgaagggtcgttccgaagggc 61
Query: 61 tggttccgctgctcgttcatggttcccactatcctatctcatcatgtgtgtatatatgta 120
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 62 tggttccgctgctcgttcatggttcccactatcctatctcatca--tgtgtatatatgta 119
Query: 121 ttccatgggggagggtttctctctcgtctttgagataggcttgtggtttgcatgaccgag 180
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 120 atccatgggggagggtt--tctctcgtctttgagataggcttgtggtttgcatgaccgag 177
Query: 181 gagctgcaccgcccccttgctggccgctctttggattgaagggagctctgcatcctgatc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 178 gagctgcaccgcccccttgctggccgctctttggattgaagggagctctgcatcctgatc 237
Query: 241 cacccctc 248
||||||||
Sbjct: 238 cacccctc 245
>54628_sof-miR159a:pmrd
Length = 265
Score = 188 bits (95), Expect = 1e-48
Identities = 98/99 (98%)
Strand = Plus / Plus
Query: 144 tcgtctttgagataggcttgtggtttgcatgaccgaggagctgcaccgcccccttgctgg 203
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 160 tcgtctttgagataggcttgtggtttgcatgaccgaggagctgcaccgtccccttgctgg 219
Query: 204 ccgctctttggattgaagggagctctgcatcctgatcca 242
|||||||||||||||||||||||||||||||||||||||
Sbjct: 220 ccgctctttggattgaagggagctctgcatcctgatcca 258
Score = 157 bits (79), Expect = 5e-39
Identities = 107/115 (93%), Gaps = 1/115 (0%)
Strand = Plus / Plus
Query: 8 ttgggtttgaagcggagctcctatcattccaatgaagggtcgttccgaagggctggttcc 67
|||| |||||||||||||||||||||||||||||||||| ||||| |||||| || ||||
Sbjct: 9 ttggatttgaagcggagctcctatcattccaatgaagggccgttctgaagggttg-ttcc 67
Query: 68 gctgctcgttcatggttcccactatcctatctcatcatgtgtgtatatatgtatt 122
|||||||||||||||||||||||||||||||||||||||| ||| | ||||||||
Sbjct: 68 gctgctcgttcatggttcccactatcctatctcatcatgtatgtgtgtatgtatt 122
>54629_sof-miR159b:pmrd
Length = 266
Score = 180 bits (91), Expect = 3e-46
Identities = 94/95 (98%)
Strand = Plus / Plus
Query: 144 tcgtctttgagataggcttgtggtttgcatgaccgaggagctgcaccgcccccttgctgg 203
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 161 tcgtctttgagataggcttgtggtttgcatgaccgaggagctgcaccgtccccttgctgg 220
Query: 204 ccgctctttggattgaagggagctctgcatcctga 238
|||||||||||||||||||||||||||||||||||
Sbjct: 221 ccgctctttggattgaagggagctctgcatcctga 255
Score = 165 bits (83), Expect = 2e-41
Identities = 108/115 (93%), Gaps = 1/115 (0%)
Strand = Plus / Plus
Query: 8 ttgggtttgaagcggagctcctatcattccaatgaagggtcgttccgaagggctggttcc 67
|||| |||||||||||||||||||||||||||||||||| ||||| |||||| |||||||
Sbjct: 9 ttggatttgaagcggagctcctatcattccaatgaagggccgttctgaaggg-tggttcc 67
Query: 68 gctgctcgttcatggttcccactatcctatctcatcatgtgtgtatatatgtatt 122
|||||||||||||||||||||||||||||||||||||||| ||| | ||||||||
Sbjct: 68 gctgctcgttcatggttcccactatcctatctcatcatgtatgtgtgtatgtatt 122
>54632_sof-miR159e:pmrd
Length = 264
Score = 165 bits (83), Expect = 2e-41
Identities = 108/115 (93%), Gaps = 1/115 (0%)
Strand = Plus / Plus
Query: 8 ttgggtttgaagcggagctcctatcattccaatgaagggtcgttccgaagggctggttcc 67
|||| |||||||||||||||||||||||||||||||||| ||||| |||||| |||||||
Sbjct: 8 ttggatttgaagcggagctcctatcattccaatgaagggccgttctgaaggg-tggttcc 66
Query: 68 gctgctcgttcatggttcccactatcctatctcatcatgtgtgtatatatgtatt 122
|||||||||||||||||||||||||||||||||||||||| ||| | ||||||||
Sbjct: 67 gctgctcgttcatggttcccactatcctatctcatcatgtatgtgtgtatgtatt 121
Score = 147 bits (74), Expect = 5e-36
Identities = 83/86 (96%)
Strand = Plus / Plus
Query: 144 tcgtctttgagataggcttgtggtttgcatgaccgaggagctgcaccgcccccttgctgg 203
|||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct: 159 tcgtctttgagataggcttgtggtttgcatgaccgaagagctgcaccgtccccttgctgg 218
Query: 204 ccgctctttggattgaagggagctct 229
||||||||||||||||| ||||||||
Sbjct: 219 ccgctctttggattgaaaggagctct 244
>54631_sof-miR159d:pmrd
Length = 265
Score = 165 bits (83), Expect = 2e-41
Identities = 95/99 (95%)
Strand = Plus / Plus
Query: 144 tcgtctttgagataggcttgtggtttgcatgaccgaggagctgcaccgcccccttgctgg 203
|||||| ||||||| ||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct: 160 tcgtctatgagatacgcttgtggtttgcatgaccgatgagctgcaccgtccccttgctgg 219
Query: 204 ccgctctttggattgaagggagctctgcatcctgatcca 242
|||||||||||||||||||||||||||||||||||||||
Sbjct: 220 ccgctctttggattgaagggagctctgcatcctgatcca 258
Score = 157 bits (79), Expect = 5e-39
Identities = 107/115 (93%), Gaps = 1/115 (0%)
Strand = Plus / Plus
Query: 8 ttgggtttgaagcggagctcctatcattccaatgaagggtcgttccgaagggctggttcc 67
|||| |||||||||||||||||||||||||||||||||| ||||| |||||| || ||||
Sbjct: 9 ttggatttgaagcggagctcctatcattccaatgaagggccgttctgaagggttg-ttcc 67
Query: 68 gctgctcgttcatggttcccactatcctatctcatcatgtgtgtatatatgtatt 122
|||||||||||||||||||||||||||||||||||||||| ||| | ||||||||
Sbjct: 68 gctgctcgttcatggttcccactatcctatctcatcatgtatgtgtgtatgtatt 122
>51338_pgl-miR159:pmrd
Length = 226
Score = 145 bits (73), Expect = 2e-35
Identities = 79/81 (97%)
Strand = Plus / Plus
Query: 150 ttgagataggcttgtggtttgcatgaccgaggagctgcaccgcccccttgctggccgctc 209
||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||
Sbjct: 146 ttgagataggcttgtggcttgcatgaccgaggagctgcaccgtccccttgctggccgctc 205
Query: 210 tttggattgaagggagctctg 230
|||||||||||||||||||||
Sbjct: 206 tttggattgaagggagctctg 226
Score = 85.7 bits (43), Expect = 1e-17
Identities = 73/83 (87%)
Strand = Plus / Plus
Query: 20 cggagctcctatcattccaatgaagggtcgttccgaagggctggttccgctgctcgttca 79
|||||||||||||||||||||||| ||| ||| ||| |||| | ||||||||||||
Sbjct: 1 cggagctcctatcattccaatgaaaggttgtttttgtgggttggtacagctgctcgttca 60
Query: 80 tggttcccactatcctatctcat 102
|||||||||||||||||||||||
Sbjct: 61 tggttcccactatcctatctcat 83
>54392_sar-miR159:pmrd
Length = 175
Score = 109 bits (55), Expect = 1e-24
Identities = 73/79 (92%)
Strand = Plus / Plus
Query: 152 gagataggcttgtggtttgcatgaccgaggagctgcaccgcccccttgctggccgctctt 211
||||||||| ||||| ||||||||||||||||| ||| || ||||| |||||||||||||
Sbjct: 97 gagataggcctgtggcttgcatgaccgaggagccgcatcgtcccctcgctggccgctctt 156
Query: 212 tggattgaagggagctctg 230
|||||||||||||||||||
Sbjct: 157 tggattgaagggagctctg 175
Score = 81.8 bits (41), Expect = 2e-16
Identities = 69/77 (89%), Gaps = 1/77 (1%)
Strand = Plus / Plus
Query: 21 ggagctcctatcattccaatgaagggtcgttcc-gaagggctggttccgctgctcgttca 79
||||||||||||||||||||||| |||| | | |||||| |||| | ||||||||||||
Sbjct: 2 ggagctcctatcattccaatgaaaggtcttgctagaaggggtggtacagctgctcgttca 61
Query: 80 tggttcccactatccta 96
|||||||||||||||||
Sbjct: 62 tggttcccactatccta 78
>54931_zma-miR159b:pmrd
Length = 221
Score = 105 bits (53), Expect = 2e-23
Identities = 77/85 (90%)
Strand = Plus / Plus
Query: 150 ttgagataggcttgtggtttgcatgaccgaggagctgcaccgcccccttgctggccgctc 209
||||||| |||||||||||||||||||||||||||||||| |||| | | || |||||
Sbjct: 122 ttgagatgggcttgtggtttgcatgaccgaggagctgcacgtccccttcgttgaccgctg 181
Query: 210 tttggattgaagggagctctgcatc 234
|||||||||||||||||||||||||
Sbjct: 182 tttggattgaagggagctctgcatc 206
Score = 58.0 bits (29), Expect = 3e-09
Identities = 35/37 (94%)
Strand = Plus / Plus
Query: 68 gctgctcgttcatggttcccactatcctatctcatca 104
||||||||||||||||||||||| ||| |||||||||
Sbjct: 68 gctgctcgttcatggttcccactgtcccatctcatca 104
>48820_osa-miR159b:pmrd
Length = 188
Score = 97.6 bits (49), Expect = 4e-21
Identities = 79/89 (88%)
Strand = Plus / Plus
Query: 152 gagataggcttgtggtttgcatgaccgaggagctgcaccgcccccttgctggccgctctt 211
|||||||||||||||||||||||||| |||||| | | | | |||||||| || |||||
Sbjct: 100 gagataggcttgtggtttgcatgaccaaggagccgaatcaactccttgctgaccactctt 159
Query: 212 tggattgaagggagctctgcatcctgatc 240
||||||||||||||||||||||| |||||
Sbjct: 160 tggattgaagggagctctgcatcttgatc 188
Score = 56.0 bits (28), Expect = 1e-08
Identities = 74/88 (84%), Gaps = 1/88 (1%)
Strand = Plus / Plus
Query: 15 tgaagcggagctcctatcattccaatgaagggtcgttccgaagggctggttccgctgctc 74
||||| ||||||||| || |||||||||| ||| || |||||| || | | ||||||
Sbjct: 6 tgaagtggagctcctttcgttccaatgaaaggtttatctgaaggg-tgatacagctgctt 64
Query: 75 gttcatggttcccactatcctatctcat 102
|||||||||||||||||| |||||||||
Sbjct: 65 gttcatggttcccactattctatctcat 92
>54673_tae-miR159a:pmrd
Length = 177
Score = 95.6 bits (48), Expect = 2e-20
Identities = 72/80 (90%)
Strand = Plus / Plus
Query: 21 ggagctcctatcattccaatgaagggtcgttccgaagggctggttccgctgctcgttcat 80
|||||||||||||||||||||||||||| | |||||| | || | |||||||||||||
Sbjct: 3 ggagctcctatcattccaatgaagggtctaccggaagggtttgtgcagctgctcgttcat 62
Query: 81 ggttcccactatcctatctc 100
||||||||||||||||||||
Sbjct: 63 ggttcccactatcctatctc 82
Score = 83.8 bits (42), Expect = 6e-17
Identities = 72/82 (87%)
Strand = Plus / Plus
Query: 152 gagataggcttgtggtttgcatgaccgaggagctgcaccgcccccttgctggccgctctt 211
|||| |||| ||||||||||||||||||||||| || || |||| |||| ||||| ||
Sbjct: 96 gagagaggcctgtggtttgcatgaccgaggagccgcttcgatccctcgctgaccgctgtt 155
Query: 212 tggattgaagggagctctgcat 233
||||||||||||||||||||||
Sbjct: 156 tggattgaagggagctctgcat 177
>48657_hvv-miR159b:pmrd
Length = 174
Score = 87.7 bits (44), Expect = 4e-18
Identities = 71/80 (88%)
Strand = Plus / Plus
Query: 21 ggagctcctatcattccaatgaagggtcgttccgaagggctggttccgctgctcgttcat 80
|||||||||||||||||||||||||||| | |||||| | || | |||||| ||||||
Sbjct: 2 ggagctcctatcattccaatgaagggtctaccggaagggtttgtgcagctgcttgttcat 61
Query: 81 ggttcccactatcctatctc 100
||||||||||||||||||||
Sbjct: 62 ggttcccactatcctatctc 81
Score = 85.7 bits (43), Expect = 1e-17
Identities = 70/79 (88%)
Strand = Plus / Plus
Query: 152 gagataggcttgtggtttgcatgaccgaggagctgcaccgcccccttgctggccgctctt 211
|||||||||||||||||||||||| |||||||| || || |||| |||| ||||| ||
Sbjct: 96 gagataggcttgtggtttgcatgatcgaggagccgcttcgatccctcgctgaccgctgtt 155
Query: 212 tggattgaagggagctctg 230
|||||||||||||||||||
Sbjct: 156 tggattgaagggagctctg 174
>54934_zma-miR159e:pmrd
Length = 203
Score = 85.7 bits (43), Expect = 1e-17
Identities = 74/83 (89%), Gaps = 1/83 (1%)
Strand = Plus / Plus
Query: 150 ttgagataggcttgtggtttgcatgaccgaggagctgcaccgccccctt-gctggccgct 208
||||||| |||||||||||||||||||||||||||||| || |||||| | || |||||
Sbjct: 121 ttgagatgggcttgtggtttgcatgaccgaggagctgcctcgtccccttcgttgaccgct 180
Query: 209 ctttggattgaagggagctctgc 231
|||||| |||||||||||||||
Sbjct: 181 gtttggagtgaagggagctctgc 203
Score = 58.0 bits (29), Expect = 3e-09
Identities = 35/37 (94%)
Strand = Plus / Plus
Query: 68 gctgctcgttcatggttcccactatcctatctcatca 104
||||||||||||||||||||||| ||| |||||||||
Sbjct: 50 gctgctcgttcatggttcccactgtcccatctcatca 86
>54937_zma-miR159m:pmrd
Length = 457
Score = 77.8 bits (39), Expect = 4e-15
Identities = 39/39 (100%)
Strand = Plus / Plus
Query: 210 tttggattgaagggagctctgcatcctgatccacccctc 248
|||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tttggattgaagggagctctgcatcctgatccacccctc 39
>54653_spr-miR159:pmrd
Length = 392
Score = 65.9 bits (33), Expect = 1e-11
Identities = 33/33 (100%)
Strand = Plus / Plus
Query: 210 tttggattgaagggagctctgcatcctgatcca 242
|||||||||||||||||||||||||||||||||
Sbjct: 1 tttggattgaagggagctctgcatcctgatcca 33
>54674_tae-miR159b:pmrd
Length = 255
Score = 56.0 bits (28), Expect = 1e-08
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 207 ctctttggattgaagggagctctgcatc 234
||||||||||||||||||||||||||||
Sbjct: 227 ctctttggattgaagggagctctgcatc 254
>48819_osa-miR159a:pmrd
Length = 272
Score = 56.0 bits (28), Expect = 1e-08
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 207 ctctttggattgaagggagctctgcatc 234
||||||||||||||||||||||||||||
Sbjct: 239 ctctttggattgaagggagctctgcatc 266
>48796_oru-miR159:pmrd
Length = 274
Score = 56.0 bits (28), Expect = 1e-08
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 207 ctctttggattgaagggagctctgcatc 234
||||||||||||||||||||||||||||
Sbjct: 239 ctctttggattgaagggagctctgcatc 266
>48656_hvv-miR159a:pmrd
Length = 303
Score = 54.0 bits (27), Expect = 5e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 210 tttggattgaagggagctctgcatcctgatc 240
||||||||||||||||||||||||| |||||
Sbjct: 1 tttggattgaagggagctctgcatcttgatc 31
>48825_osa-miR159m:pmrd
Length = 249
Score = 48.1 bits (24), Expect = 3e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 207 ctctttggattgaagggagctctg 230
||||||||||||||||||||||||
Sbjct: 226 ctctttggattgaagggagctctg 249
>46932_ath-miR159b:pmrd
Length = 196
Score = 46.1 bits (23), Expect = 1e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 208 tctttggattgaagggagctctgcatc 234
|||||||||||||||||||||| ||||
Sbjct: 166 tctttggattgaagggagctcttcatc 192
>54378_pvu-miR159:pmrd
Length = 174
Score = 44.1 bits (22), Expect = 5e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 208 tctttggattgaagggagctct 229
||||||||||||||||||||||
Sbjct: 151 tctttggattgaagggagctct 172
>54377_pvu-miR159:pmrd
Length = 174
Score = 44.1 bits (22), Expect = 5e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 208 tctttggattgaagggagctct 229
||||||||||||||||||||||
Sbjct: 151 tctttggattgaagggagctct 172
>48699_mtr-miR159a:pmrd
Length = 168
Score = 44.1 bits (22), Expect = 5e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 208 tctttggattgaagggagctct 229
||||||||||||||||||||||
Sbjct: 146 tctttggattgaagggagctct 167
>48539_gma-miR159a:pmrd
Length = 214
Score = 44.1 bits (22), Expect = 5e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 208 tctttggattgaagggagctct 229
||||||||||||||||||||||
Sbjct: 173 tctttggattgaagggagctct 194
>48395_bra-miR159a:pmrd
Length = 185
Score = 44.1 bits (22), Expect = 5e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 208 tctttggattgaagggagctct 229
||||||||||||||||||||||
Sbjct: 161 tctttggattgaagggagctct 182
>48339_bna-miR159:pmrd
Length = 183
Score = 44.1 bits (22), Expect = 5e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 208 tctttggattgaagggagctct 229
||||||||||||||||||||||
Sbjct: 159 tctttggattgaagggagctct 180
>46931_ath-miR159a:pmrd
Length = 184
Score = 44.1 bits (22), Expect = 5e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 208 tctttggattgaagggagctct 229
||||||||||||||||||||||
Sbjct: 161 tctttggattgaagggagctct 182
>48701_mtr-miR159c:pmrd
Length = 44
Score = 42.1 bits (21), Expect = 2e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 210 tttggattgaagggagctctgcatc 234
|||||||||||||||||||| ||||
Sbjct: 1 tttggattgaagggagctctacatc 25
>54777_vvi-miR159c:pmrd
Length = 190
Score = 40.1 bits (20), Expect = 8e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 210 tttggattgaagggagctct 229
||||||||||||||||||||
Sbjct: 160 tttggattgaagggagctct 179
>54540_sly-miR159:pmrd
Length = 177
Score = 40.1 bits (20), Expect = 8e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 210 tttggattgaagggagctct 229
||||||||||||||||||||
Sbjct: 157 tttggattgaagggagctct 176
>52093_ptc-miRf10271-akr:pmrd
Length = 174
Score = 40.1 bits (20), Expect = 8e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 210 tttggattgaagggagctct 229
||||||||||||||||||||
Sbjct: 149 tttggattgaagggagctct 168
>51604_ptc-miR159c:pmrd
Length = 183
Score = 40.1 bits (20), Expect = 8e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 210 tttggattgaagggagctct 229
||||||||||||||||||||
Sbjct: 154 tttggattgaagggagctct 173
>51603_ptc-miR159b:pmrd
Length = 187
Score = 40.1 bits (20), Expect = 8e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 210 tttggattgaagggagctct 229
||||||||||||||||||||
Sbjct: 158 tttggattgaagggagctct 177
>51602_ptc-miR159a:pmrd
Length = 183
Score = 40.1 bits (20), Expect = 8e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 210 tttggattgaagggagctct 229
||||||||||||||||||||
Sbjct: 154 tttggattgaagggagctct 173
>48728_mtr-miR319b:pmrd
Length = 42
Score = 40.1 bits (20), Expect = 8e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 211 ttggattgaagggagctctgcatc 234
||||||||||||||||||| ||||
Sbjct: 1 ttggattgaagggagctctacatc 24
>48686_ltu-miR159:pmrd
Length = 345
Score = 40.1 bits (20), Expect = 8e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 210 tttggattgaagggagctct 229
||||||||||||||||||||
Sbjct: 1 tttggattgaagggagctct 20
