miRNEST 2.0, an integrative microRNA resource :: BLAST
>54930_zma-miR159a:pmrd
Length = 246
Score = 367 bits (185), Expect = e-102
Identities = 232/246 (94%), Gaps = 5/246 (2%)
Strand = Plus / Plus
Query: 1 cgatgctttgggtttgaagcggagctcctatcattccaatgaagggtcgttccgaagggc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2 cgatgctttgggtttgaagcggagctcctatcattccaatgaagggtcgttccgaagggc 61
Query: 61 tggttccgctgctcgttcatggttcccactatcctatctcatctggtgtatatatgtaat 120
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 62 tggttccgctgctcgttcatggttcccactatcctatctcatcatgtgtatatatgtaat 121
Query: 121 ccatnnnnnnnagggtttctctcgtctttgagataaggccttgtggtttgcatgaccgag 180
|||| |||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct: 122 ccat--gggggagggtttctctcgtctttgagata--ggcttgtggtttgcatgaccgag 177
Query: 181 gagctgcaccgcccccttgctgggcgctcttttggattgaagggagctctgcatcctgat 240
||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct: 178 gagctgcaccgcccccttgctggccgctc-tttggattgaagggagctctgcatcctgat 236
Query: 241 ccaccc 246
||||||
Sbjct: 237 ccaccc 242
>54632_sof-miR159e:pmrd
Length = 264
Score = 151 bits (76), Expect = 3e-37
Identities = 92/96 (95%), Gaps = 1/96 (1%)
Strand = Plus / Plus
Query: 8 ttgggtttgaagcggagctcctatcattccaatgaagggtcgttccgaagggctggttcc 67
|||| |||||||||||||||||||||||||||||||||| ||||| |||||| |||||||
Sbjct: 8 ttggatttgaagcggagctcctatcattccaatgaagggccgttctgaaggg-tggttcc 66
Query: 68 gctgctcgttcatggttcccactatcctatctcatc 103
||||||||||||||||||||||||||||||||||||
Sbjct: 67 gctgctcgttcatggttcccactatcctatctcatc 102
Score = 99.6 bits (50), Expect = 1e-21
Identities = 81/89 (91%), Gaps = 3/89 (3%)
Strand = Plus / Plus
Query: 142 tcgtctttgagataaggccttgtggtttgcatgaccgaggagctgcaccgcccccttgct 201
|||||||||||||| | |||||||||||||||||||| ||||||||||| |||||||||
Sbjct: 159 tcgtctttgagatagg--cttgtggtttgcatgaccgaagagctgcaccgtccccttgct 216
Query: 202 gggcgctcttttggattgaagggagctct 230
|| ||||| ||||||||||| ||||||||
Sbjct: 217 ggccgctc-tttggattgaaaggagctct 244
>54629_sof-miR159b:pmrd
Length = 266
Score = 151 bits (76), Expect = 3e-37
Identities = 92/96 (95%), Gaps = 1/96 (1%)
Strand = Plus / Plus
Query: 8 ttgggtttgaagcggagctcctatcattccaatgaagggtcgttccgaagggctggttcc 67
|||| |||||||||||||||||||||||||||||||||| ||||| |||||| |||||||
Sbjct: 9 ttggatttgaagcggagctcctatcattccaatgaagggccgttctgaaggg-tggttcc 67
Query: 68 gctgctcgttcatggttcccactatcctatctcatc 103
||||||||||||||||||||||||||||||||||||
Sbjct: 68 gctgctcgttcatggttcccactatcctatctcatc 103
Score = 133 bits (67), Expect = 7e-32
Identities = 92/98 (93%), Gaps = 3/98 (3%)
Strand = Plus / Plus
Query: 142 tcgtctttgagataaggccttgtggtttgcatgaccgaggagctgcaccgcccccttgct 201
|||||||||||||| | |||||||||||||||||||||||||||||||| |||||||||
Sbjct: 161 tcgtctttgagatagg--cttgtggtttgcatgaccgaggagctgcaccgtccccttgct 218
Query: 202 gggcgctcttttggattgaagggagctctgcatcctga 239
|| ||||| |||||||||||||||||||||||||||||
Sbjct: 219 ggccgctc-tttggattgaagggagctctgcatcctga 255
>54631_sof-miR159d:pmrd
Length = 265
Score = 143 bits (72), Expect = 7e-35
Identities = 91/96 (94%), Gaps = 1/96 (1%)
Strand = Plus / Plus
Query: 8 ttgggtttgaagcggagctcctatcattccaatgaagggtcgttccgaagggctggttcc 67
|||| |||||||||||||||||||||||||||||||||| ||||| |||||| || ||||
Sbjct: 9 ttggatttgaagcggagctcctatcattccaatgaagggccgttctgaagggttg-ttcc 67
Query: 68 gctgctcgttcatggttcccactatcctatctcatc 103
||||||||||||||||||||||||||||||||||||
Sbjct: 68 gctgctcgttcatggttcccactatcctatctcatc 103
Score = 127 bits (64), Expect = 4e-30
Identities = 80/84 (95%), Gaps = 1/84 (1%)
Strand = Plus / Plus
Query: 160 cttgtggtttgcatgaccgaggagctgcaccgcccccttgctgggcgctcttttggattg 219
|||||||||||||||||||| ||||||||||| ||||||||||| ||||| |||||||||
Sbjct: 176 cttgtggtttgcatgaccgatgagctgcaccgtccccttgctggccgctc-tttggattg 234
Query: 220 aagggagctctgcatcctgatcca 243
||||||||||||||||||||||||
Sbjct: 235 aagggagctctgcatcctgatcca 258
>54628_sof-miR159a:pmrd
Length = 265
Score = 143 bits (72), Expect = 7e-35
Identities = 91/96 (94%), Gaps = 1/96 (1%)
Strand = Plus / Plus
Query: 8 ttgggtttgaagcggagctcctatcattccaatgaagggtcgttccgaagggctggttcc 67
|||| |||||||||||||||||||||||||||||||||| ||||| |||||| || ||||
Sbjct: 9 ttggatttgaagcggagctcctatcattccaatgaagggccgttctgaagggttg-ttcc 67
Query: 68 gctgctcgttcatggttcccactatcctatctcatc 103
||||||||||||||||||||||||||||||||||||
Sbjct: 68 gctgctcgttcatggttcccactatcctatctcatc 103
Score = 141 bits (71), Expect = 3e-34
Identities = 96/102 (94%), Gaps = 3/102 (2%)
Strand = Plus / Plus
Query: 142 tcgtctttgagataaggccttgtggtttgcatgaccgaggagctgcaccgcccccttgct 201
|||||||||||||| | |||||||||||||||||||||||||||||||| |||||||||
Sbjct: 160 tcgtctttgagatagg--cttgtggtttgcatgaccgaggagctgcaccgtccccttgct 217
Query: 202 gggcgctcttttggattgaagggagctctgcatcctgatcca 243
|| ||||| |||||||||||||||||||||||||||||||||
Sbjct: 218 ggccgctc-tttggattgaagggagctctgcatcctgatcca 258
>51338_pgl-miR159:pmrd
Length = 226
Score = 103 bits (52), Expect = 6e-23
Identities = 68/72 (94%), Gaps = 1/72 (1%)
Strand = Plus / Plus
Query: 160 cttgtggtttgcatgaccgaggagctgcaccgcccccttgctgggcgctcttttggattg 219
||||||| |||||||||||||||||||||||| ||||||||||| ||||| |||||||||
Sbjct: 156 cttgtggcttgcatgaccgaggagctgcaccgtccccttgctggccgctc-tttggattg 214
Query: 220 aagggagctctg 231
||||||||||||
Sbjct: 215 aagggagctctg 226
Score = 85.7 bits (43), Expect = 1e-17
Identities = 73/83 (87%)
Strand = Plus / Plus
Query: 20 cggagctcctatcattccaatgaagggtcgttccgaagggctggttccgctgctcgttca 79
|||||||||||||||||||||||| ||| ||| ||| |||| | ||||||||||||
Sbjct: 1 cggagctcctatcattccaatgaaaggttgtttttgtgggttggtacagctgctcgttca 60
Query: 80 tggttcccactatcctatctcat 102
|||||||||||||||||||||||
Sbjct: 61 tggttcccactatcctatctcat 83
>54673_tae-miR159a:pmrd
Length = 177
Score = 95.6 bits (48), Expect = 2e-20
Identities = 72/80 (90%)
Strand = Plus / Plus
Query: 21 ggagctcctatcattccaatgaagggtcgttccgaagggctggttccgctgctcgttcat 80
|||||||||||||||||||||||||||| | |||||| | || | |||||||||||||
Sbjct: 3 ggagctcctatcattccaatgaagggtctaccggaagggtttgtgcagctgctcgttcat 62
Query: 81 ggttcccactatcctatctc 100
||||||||||||||||||||
Sbjct: 63 ggttcccactatcctatctc 82
Score = 58.0 bits (29), Expect = 3e-09
Identities = 63/73 (86%), Gaps = 1/73 (1%)
Strand = Plus / Plus
Query: 162 tgtggtttgcatgaccgaggagctgcaccgcccccttgctgggcgctcttttggattgaa 221
||||||||||||||||||||||| || || |||| |||| |||| |||||||||||
Sbjct: 106 tgtggtttgcatgaccgaggagccgcttcgatccctcgctgaccgct-gtttggattgaa 164
Query: 222 gggagctctgcat 234
|||||||||||||
Sbjct: 165 gggagctctgcat 177
>48657_hvv-miR159b:pmrd
Length = 174
Score = 87.7 bits (44), Expect = 4e-18
Identities = 71/80 (88%)
Strand = Plus / Plus
Query: 21 ggagctcctatcattccaatgaagggtcgttccgaagggctggttccgctgctcgttcat 80
|||||||||||||||||||||||||||| | |||||| | || | |||||| ||||||
Sbjct: 2 ggagctcctatcattccaatgaagggtctaccggaagggtttgtgcagctgcttgttcat 61
Query: 81 ggttcccactatcctatctc 100
||||||||||||||||||||
Sbjct: 62 ggttcccactatcctatctc 81
Score = 48.1 bits (24), Expect = 3e-06
Identities = 61/72 (84%), Gaps = 1/72 (1%)
Strand = Plus / Plus
Query: 160 cttgtggtttgcatgaccgaggagctgcaccgcccccttgctgggcgctcttttggattg 219
|||||||||||||||| |||||||| || || |||| |||| |||| |||||||||
Sbjct: 104 cttgtggtttgcatgatcgaggagccgcttcgatccctcgctgaccgct-gtttggattg 162
Query: 220 aagggagctctg 231
||||||||||||
Sbjct: 163 aagggagctctg 174
>54392_sar-miR159:pmrd
Length = 175
Score = 81.8 bits (41), Expect = 2e-16
Identities = 69/77 (89%), Gaps = 1/77 (1%)
Strand = Plus / Plus
Query: 21 ggagctcctatcattccaatgaagggtcgttcc-gaagggctggttccgctgctcgttca 79
||||||||||||||||||||||| |||| | | |||||| |||| | ||||||||||||
Sbjct: 2 ggagctcctatcattccaatgaaaggtcttgctagaaggggtggtacagctgctcgttca 61
Query: 80 tggttcccactatccta 96
|||||||||||||||||
Sbjct: 62 tggttcccactatccta 78
Score = 75.8 bits (38), Expect = 1e-14
Identities = 63/70 (90%), Gaps = 1/70 (1%)
Strand = Plus / Plus
Query: 162 tgtggtttgcatgaccgaggagctgcaccgcccccttgctgggcgctcttttggattgaa 221
||||| ||||||||||||||||| ||| || ||||| ||||| ||||| |||||||||||
Sbjct: 107 tgtggcttgcatgaccgaggagccgcatcgtcccctcgctggccgctc-tttggattgaa 165
Query: 222 gggagctctg 231
||||||||||
Sbjct: 166 gggagctctg 175
>54937_zma-miR159m:pmrd
Length = 457
Score = 71.9 bits (36), Expect = 2e-13
Identities = 36/36 (100%)
Strand = Plus / Plus
Query: 211 tttggattgaagggagctctgcatcctgatccaccc 246
||||||||||||||||||||||||||||||||||||
Sbjct: 1 tttggattgaagggagctctgcatcctgatccaccc 36
>54931_zma-miR159b:pmrd
Length = 221
Score = 71.9 bits (36), Expect = 2e-13
Identities = 67/76 (88%), Gaps = 1/76 (1%)
Strand = Plus / Plus
Query: 160 cttgtggtttgcatgaccgaggagctgcaccgcccccttgctgggcgctcttttggattg 219
|||||||||||||||||||||||||||||| |||| | | || |||| |||||||||
Sbjct: 132 cttgtggtttgcatgaccgaggagctgcacgtccccttcgttgaccgct-gtttggattg 190
Query: 220 aagggagctctgcatc 235
||||||||||||||||
Sbjct: 191 aagggagctctgcatc 206
Score = 56.0 bits (28), Expect = 1e-08
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 68 gctgctcgttcatggttcccactatcctatctcatc 103
||||||||||||||||||||||| ||| ||||||||
Sbjct: 68 gctgctcgttcatggttcccactgtcccatctcatc 103
>54653_spr-miR159:pmrd
Length = 392
Score = 65.9 bits (33), Expect = 1e-11
Identities = 33/33 (100%)
Strand = Plus / Plus
Query: 211 tttggattgaagggagctctgcatcctgatcca 243
|||||||||||||||||||||||||||||||||
Sbjct: 1 tttggattgaagggagctctgcatcctgatcca 33
>48820_osa-miR159b:pmrd
Length = 188
Score = 60.0 bits (30), Expect = 9e-10
Identities = 70/82 (85%), Gaps = 1/82 (1%)
Strand = Plus / Plus
Query: 160 cttgtggtttgcatgaccgaggagctgcaccgcccccttgctgggcgctcttttggattg 219
|||||||||||||||||| |||||| | | | | |||||||| | ||| |||||||||
Sbjct: 108 cttgtggtttgcatgaccaaggagccgaatcaactccttgctgaccactc-tttggattg 166
Query: 220 aagggagctctgcatcctgatc 241
|||||||||||||||| |||||
Sbjct: 167 aagggagctctgcatcttgatc 188
Score = 56.0 bits (28), Expect = 1e-08
Identities = 74/88 (84%), Gaps = 1/88 (1%)
Strand = Plus / Plus
Query: 15 tgaagcggagctcctatcattccaatgaagggtcgttccgaagggctggttccgctgctc 74
||||| ||||||||| || |||||||||| ||| || |||||| || | | ||||||
Sbjct: 6 tgaagtggagctcctttcgttccaatgaaaggtttatctgaaggg-tgatacagctgctt 64
Query: 75 gttcatggttcccactatcctatctcat 102
|||||||||||||||||| |||||||||
Sbjct: 65 gttcatggttcccactattctatctcat 92
>54934_zma-miR159e:pmrd
Length = 203
Score = 56.0 bits (28), Expect = 1e-08
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 68 gctgctcgttcatggttcccactatcctatctcatc 103
||||||||||||||||||||||| ||| ||||||||
Sbjct: 50 gctgctcgttcatggttcccactgtcccatctcatc 85
Score = 56.0 bits (28), Expect = 1e-08
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 160 cttgtggtttgcatgaccgaggagctgc 187
||||||||||||||||||||||||||||
Sbjct: 131 cttgtggtttgcatgaccgaggagctgc 158
>48656_hvv-miR159a:pmrd
Length = 303
Score = 54.0 bits (27), Expect = 5e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 211 tttggattgaagggagctctgcatcctgatc 241
||||||||||||||||||||||||| |||||
Sbjct: 1 tttggattgaagggagctctgcatcttgatc 31
>54674_tae-miR159b:pmrd
Length = 255
Score = 50.1 bits (25), Expect = 8e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 211 tttggattgaagggagctctgcatc 235
|||||||||||||||||||||||||
Sbjct: 230 tttggattgaagggagctctgcatc 254
>48819_osa-miR159a:pmrd
Length = 272
Score = 50.1 bits (25), Expect = 8e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 211 tttggattgaagggagctctgcatc 235
|||||||||||||||||||||||||
Sbjct: 242 tttggattgaagggagctctgcatc 266
>48796_oru-miR159:pmrd
Length = 274
Score = 50.1 bits (25), Expect = 8e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 211 tttggattgaagggagctctgcatc 235
|||||||||||||||||||||||||
Sbjct: 242 tttggattgaagggagctctgcatc 266
>54540_sly-miR159:pmrd
Length = 177
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 210 ttttggattgaagggagctct 230
|||||||||||||||||||||
Sbjct: 156 ttttggattgaagggagctct 176
>52093_ptc-miRf10271-akr:pmrd
Length = 174
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 210 ttttggattgaagggagctct 230
|||||||||||||||||||||
Sbjct: 148 ttttggattgaagggagctct 168
>51604_ptc-miR159c:pmrd
Length = 183
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 210 ttttggattgaagggagctct 230
|||||||||||||||||||||
Sbjct: 153 ttttggattgaagggagctct 173
>51603_ptc-miR159b:pmrd
Length = 187
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 210 ttttggattgaagggagctct 230
|||||||||||||||||||||
Sbjct: 157 ttttggattgaagggagctct 177
>51602_ptc-miR159a:pmrd
Length = 183
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 210 ttttggattgaagggagctct 230
|||||||||||||||||||||
Sbjct: 153 ttttggattgaagggagctct 173
>48825_osa-miR159m:pmrd
Length = 249
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 211 tttggattgaagggagctctg 231
|||||||||||||||||||||
Sbjct: 229 tttggattgaagggagctctg 249
>48701_mtr-miR159c:pmrd
Length = 44
Score = 42.1 bits (21), Expect = 2e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 211 tttggattgaagggagctctgcatc 235
|||||||||||||||||||| ||||
Sbjct: 1 tttggattgaagggagctctacatc 25
>46932_ath-miR159b:pmrd
Length = 196
Score = 42.1 bits (21), Expect = 2e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 211 tttggattgaagggagctctgcatc 235
|||||||||||||||||||| ||||
Sbjct: 168 tttggattgaagggagctcttcatc 192
>54777_vvi-miR159c:pmrd
Length = 190
Score = 40.1 bits (20), Expect = 8e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 211 tttggattgaagggagctct 230
||||||||||||||||||||
Sbjct: 160 tttggattgaagggagctct 179
>54378_pvu-miR159:pmrd
Length = 174
Score = 40.1 bits (20), Expect = 8e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 211 tttggattgaagggagctct 230
||||||||||||||||||||
Sbjct: 153 tttggattgaagggagctct 172
>54377_pvu-miR159:pmrd
Length = 174
Score = 40.1 bits (20), Expect = 8e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 211 tttggattgaagggagctct 230
||||||||||||||||||||
Sbjct: 153 tttggattgaagggagctct 172
>48728_mtr-miR319b:pmrd
Length = 42
Score = 40.1 bits (20), Expect = 8e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 212 ttggattgaagggagctctgcatc 235
||||||||||||||||||| ||||
Sbjct: 1 ttggattgaagggagctctacatc 24
>48699_mtr-miR159a:pmrd
Length = 168
Score = 40.1 bits (20), Expect = 8e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 211 tttggattgaagggagctct 230
||||||||||||||||||||
Sbjct: 148 tttggattgaagggagctct 167
>48686_ltu-miR159:pmrd
Length = 345
Score = 40.1 bits (20), Expect = 8e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 211 tttggattgaagggagctct 230
||||||||||||||||||||
Sbjct: 1 tttggattgaagggagctct 20
>48539_gma-miR159a:pmrd
Length = 214
Score = 40.1 bits (20), Expect = 8e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 211 tttggattgaagggagctct 230
||||||||||||||||||||
Sbjct: 175 tttggattgaagggagctct 194
>48395_bra-miR159a:pmrd
Length = 185
Score = 40.1 bits (20), Expect = 8e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 211 tttggattgaagggagctct 230
||||||||||||||||||||
Sbjct: 163 tttggattgaagggagctct 182
>48339_bna-miR159:pmrd
Length = 183
Score = 40.1 bits (20), Expect = 8e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 211 tttggattgaagggagctct 230
||||||||||||||||||||
Sbjct: 161 tttggattgaagggagctct 180
>46931_ath-miR159a:pmrd
Length = 184
Score = 40.1 bits (20), Expect = 8e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 211 tttggattgaagggagctct 230
||||||||||||||||||||
Sbjct: 163 tttggattgaagggagctct 182
