miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>48998_osa-miR439i:pmrd
Length = 103
Score = 204 bits (103), Expect = 1e-53
Identities = 103/103 (100%)
Strand = Plus / Plus
Query: 10 cacctaccctgtcgaactgacgcagttcgacatgtacctgtcgaactgtggttgttcgat 69
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 cacctaccctgtcgaactgacgcagttcgacatgtacctgtcgaactgtggttgttcgat 60
Query: 70 aggtatccctgtcgaaccgcggttgttcgacagggtgctaaac 112
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 aggtatccctgtcgaaccgcggttgttcgacagggtgctaaac 103
>48994_osa-miR439e:pmrd
Length = 98
Score = 194 bits (98), Expect = 1e-50
Identities = 98/98 (100%)
Strand = Plus / Plus
Query: 9 ccacctaccctgtcgaactgacgcagttcgacatgtacctgtcgaactgtggttgttcga 68
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ccacctaccctgtcgaactgacgcagttcgacatgtacctgtcgaactgtggttgttcga 60
Query: 69 taggtatccctgtcgaaccgcggttgttcgacagggtg 106
||||||||||||||||||||||||||||||||||||||
Sbjct: 61 taggtatccctgtcgaaccgcggttgttcgacagggtg 98
>48995_osa-miR439f:pmrd
Length = 96
Score = 190 bits (96), Expect = 2e-49
Identities = 96/96 (100%)
Strand = Plus / Plus
Query: 11 acctaccctgtcgaactgacgcagttcgacatgtacctgtcgaactgtggttgttcgata 70
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 acctaccctgtcgaactgacgcagttcgacatgtacctgtcgaactgtggttgttcgata 60
Query: 71 ggtatccctgtcgaaccgcggttgttcgacagggtg 106
||||||||||||||||||||||||||||||||||||
Sbjct: 61 ggtatccctgtcgaaccgcggttgttcgacagggtg 96
>48997_osa-miR439h:pmrd
Length = 99
Score = 188 bits (95), Expect = 6e-49
Identities = 98/99 (98%)
Strand = Plus / Plus
Query: 8 accacctaccctgtcgaactgacgcagttcgacatgtacctgtcgaactgtggttgttcg 67
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 1 accacctaccctgtcgaactcacgcagttcgacatgtacctgtcgaactgtggttgttcg 60
Query: 68 ataggtatccctgtcgaaccgcggttgttcgacagggtg 106
|||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ataggtatccctgtcgaaccgcggttgttcgacagggtg 99
>48992_osa-miR439c:pmrd
Length = 93
Score = 184 bits (93), Expect = 1e-47
Identities = 93/93 (100%)
Strand = Plus / Plus
Query: 14 taccctgtcgaactgacgcagttcgacatgtacctgtcgaactgtggttgttcgataggt 73
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 taccctgtcgaactgacgcagttcgacatgtacctgtcgaactgtggttgttcgataggt 60
Query: 74 atccctgtcgaaccgcggttgttcgacagggtg 106
|||||||||||||||||||||||||||||||||
Sbjct: 61 atccctgtcgaaccgcggttgttcgacagggtg 93
>48990_osa-miR439a:pmrd
Length = 93
Score = 184 bits (93), Expect = 1e-47
Identities = 93/93 (100%)
Strand = Plus / Plus
Query: 14 taccctgtcgaactgacgcagttcgacatgtacctgtcgaactgtggttgttcgataggt 73
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 taccctgtcgaactgacgcagttcgacatgtacctgtcgaactgtggttgttcgataggt 60
Query: 74 atccctgtcgaaccgcggttgttcgacagggtg 106
|||||||||||||||||||||||||||||||||
Sbjct: 61 atccctgtcgaaccgcggttgttcgacagggtg 93
>50501_osa-miRf11286-akr:pmrd
Length = 91
Score = 180 bits (91), Expect = 2e-46
Identities = 91/91 (100%)
Strand = Plus / Minus
Query: 15 accctgtcgaactgacgcagttcgacatgtacctgtcgaactgtggttgttcgataggta 74
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 91 accctgtcgaactgacgcagttcgacatgtacctgtcgaactgtggttgttcgataggta 32
Query: 75 tccctgtcgaaccgcggttgttcgacagggt 105
|||||||||||||||||||||||||||||||
Sbjct: 31 tccctgtcgaaccgcggttgttcgacagggt 1
>49303_osa-miRf10088-akr:pmrd
Length = 91
Score = 180 bits (91), Expect = 2e-46
Identities = 91/91 (100%)
Strand = Plus / Minus
Query: 15 accctgtcgaactgacgcagttcgacatgtacctgtcgaactgtggttgttcgataggta 74
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 91 accctgtcgaactgacgcagttcgacatgtacctgtcgaactgtggttgttcgataggta 32
Query: 75 tccctgtcgaaccgcggttgttcgacagggt 105
|||||||||||||||||||||||||||||||
Sbjct: 31 tccctgtcgaaccgcggttgttcgacagggt 1
>49259_osa-miRf10044-akr:pmrd
Length = 93
Score = 174 bits (88), Expect = 9e-45
Identities = 91/92 (98%)
Strand = Plus / Minus
Query: 14 taccctgtcgaactgacgcagttcgacatgtacctgtcgaactgtggttgttcgataggt 73
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 93 taccctgtcgaactgacgcagttcgacatgtacttgtcgaactgtggttgttcgataggt 34
Query: 74 atccctgtcgaaccgcggttgttcgacagggt 105
||||||||||||||||||||||||||||||||
Sbjct: 33 atccctgtcgaaccgcggttgttcgacagggt 2
>50781_osa-miRf11566-akr:pmrd
Length = 91
Score = 172 bits (87), Expect = 4e-44
Identities = 90/91 (98%)
Strand = Plus / Minus
Query: 15 accctgtcgaactgacgcagttcgacatgtacctgtcgaactgtggttgttcgataggta 74
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 91 accctgtcgaactgacgcagttcgacatgtacctgtcgaactgtggttgttcgatagata 32
Query: 75 tccctgtcgaaccgcggttgttcgacagggt 105
|||||||||||||||||||||||||||||||
Sbjct: 31 tccctgtcgaaccgcggttgttcgacagggt 1
>50549_osa-miRf11334-akr:pmrd
Length = 91
Score = 172 bits (87), Expect = 4e-44
Identities = 90/91 (98%)
Strand = Plus / Minus
Query: 15 accctgtcgaactgacgcagttcgacatgtacctgtcgaactgtggttgttcgataggta 74
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 91 accctgtcgaactgacgcagttcgacatgtagctgtcgaactgtggttgttcgataggta 32
Query: 75 tccctgtcgaaccgcggttgttcgacagggt 105
|||||||||||||||||||||||||||||||
Sbjct: 31 tccctgtcgaaccgcggttgttcgacagggt 1
>48996_osa-miR439g:pmrd
Length = 88
Score = 172 bits (87), Expect = 4e-44
Identities = 87/87 (100%)
Strand = Plus / Plus
Query: 17 cctgtcgaactgacgcagttcgacatgtacctgtcgaactgtggttgttcgataggtatc 76
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2 cctgtcgaactgacgcagttcgacatgtacctgtcgaactgtggttgttcgataggtatc 61
Query: 77 cctgtcgaaccgcggttgttcgacagg 103
|||||||||||||||||||||||||||
Sbjct: 62 cctgtcgaaccgcggttgttcgacagg 88
>48993_osa-miR439d:pmrd
Length = 98
Score = 170 bits (86), Expect = 1e-43
Identities = 95/98 (96%)
Strand = Plus / Plus
Query: 9 ccacctaccctgtcgaactgacgcagttcgacatgtacctgtcgaactgtggttgttcga 68
||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||
Sbjct: 1 ccacctaccctgtcgaactcacgtagttcgacatgtacctgtcgaactgtggttgttcga 60
Query: 69 taggtatccctgtcgaaccgcggttgttcgacagggtg 106
||||||||||||||||||||||||||||||| ||||||
Sbjct: 61 taggtatccctgtcgaaccgcggttgttcgatagggtg 98
>50110_osa-miRf10895-akr:pmrd
Length = 91
Score = 165 bits (83), Expect = 9e-42
Identities = 89/91 (97%)
Strand = Plus / Minus
Query: 15 accctgtcgaactgacgcagttcgacatgtacctgtcgaactgtggttgttcgataggta 74
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 91 accctgtcgaactgacgcaattcgacatgtacctgtcgaactgtggttgttcgataggta 32
Query: 75 tccctgtcgaaccgcggttgttcgacagggt 105
|||||||| ||||||||||||||||||||||
Sbjct: 31 tccctgtcaaaccgcggttgttcgacagggt 1
>49302_osa-miRf10087-akr:pmrd
Length = 103
Score = 103 bits (52), Expect = 3e-23
Identities = 87/96 (90%), Gaps = 2/96 (2%)
Strand = Plus / Minus
Query: 17 cctgtcgaactgacgcagttcgacatgtacc-tgtcgaactgtggttgttcgataggtat 75
||||||||||| |||||||||||| ||||| | |||||||||||||||||||||||||
Sbjct: 95 cctgtcgaactaccgcagttcgacaggtaccctatcgaactgtggttgttcgataggta- 37
Query: 76 ccctgtcgaaccgcggttgttcgacagggtgctaaa 111
|| ||||||||| ||||||||||| |||||||||||
Sbjct: 36 ccttgtcgaaccacggttgttcgatagggtgctaaa 1
>49290_osa-miRf10075-akr:pmrd
Length = 104
Score = 99.6 bits (50), Expect = 4e-22
Identities = 87/97 (89%), Gaps = 3/97 (3%)
Strand = Plus / Minus
Query: 17 cctgtcgaactgacgcagttcgacatgtacc--tgtcgaactgtggttgttcgataggta 74
||||||||||| |||||||||||| ||||| | |||||||||||||||||||||||||
Sbjct: 96 cctgtcgaactaccgcagttcgacaggtacccctatcgaactgtggttgttcgataggta 37
Query: 75 tccctgtcgaaccgcggttgttcgacagggtgctaaa 111
|| ||||||||| ||||||||||| |||||||||||
Sbjct: 36 -ccttgtcgaaccacggttgttcgatagggtgctaaa 1
>49289_osa-miRf10074-akr:pmrd
Length = 104
Score = 99.6 bits (50), Expect = 4e-22
Identities = 87/97 (89%), Gaps = 3/97 (3%)
Strand = Plus / Minus
Query: 17 cctgtcgaactgacgcagttcgacatgtacc--tgtcgaactgtggttgttcgataggta 74
||||||||||| |||||||||||| ||||| | |||||||||||||||||||||||||
Sbjct: 96 cctgtcgaactaccgcagttcgacaggtacccctatcgaactgtggttgttcgataggta 37
Query: 75 tccctgtcgaaccgcggttgttcgacagggtgctaaa 111
|| ||||||||| ||||||||||| |||||||||||
Sbjct: 36 -ccttgtcgaaccacggttgttcgatagggtgctaaa 1
>48991_osa-miR439b:pmrd
Length = 60
Score = 99.6 bits (50), Expect = 4e-22
Identities = 56/58 (96%)
Strand = Plus / Plus
Query: 46 cctgtcgaactgtggttgttcgataggtatccctgtcgaaccgcggttgttcgacagg 103
||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 3 cctgtcgaattgtggttgttcgataggtacccctgtcgaaccgcggttgttcgacagg 60
>50749_osa-miRf11534-akr:pmrd
Length = 106
Score = 91.7 bits (46), Expect = 1e-19
Identities = 85/98 (86%)
Strand = Plus / Minus
Query: 13 ctaccctgtcgaactgacgcagttcgacatgtacctgtcgaactgtggttgttcgatagg 72
|||||||||||||||| | | |||||| | |||||| ||||||| |||||||||||||
Sbjct: 100 ctaccctgtcgaactgccacggttcgataggtacctatcgaactacagttgttcgatagg 41
Query: 73 tatccctgtcgaaccgcggttgttcgacagggtgctaa 110
| |||||||||||| ||||||||||||||| ||||||
Sbjct: 40 ttcccctgtcgaaccacggttgttcgacaggatgctaa 3
>50780_osa-miRf11565-akr:pmrd
Length = 103
Score = 87.7 bits (44), Expect = 2e-18
Identities = 85/96 (88%), Gaps = 2/96 (2%)
Strand = Plus / Minus
Query: 17 cctgtcgaactgacgcagttcgacatgtacc-tgtcgaactgtggttgttcgataggtat 75
||||||||||| |||||||||||| ||||| | ||||||| |||||||||||||||||
Sbjct: 95 cctgtcgaactaccgcagttcgacaagtaccctatcgaactatggttgttcgataggta- 37
Query: 76 ccctgtcgaaccgcggttgttcgacagggtgctaaa 111
|| | ||||||| ||||||||||| |||||||||||
Sbjct: 36 ccgtatcgaaccacggttgttcgatagggtgctaaa 1
>50592_osa-miRf11377-akr:pmrd
Length = 87
Score = 87.7 bits (44), Expect = 2e-18
Identities = 76/84 (90%), Gaps = 2/84 (2%)
Strand = Plus / Minus
Query: 17 cctgtcgaactgacgcagttcgacatgtacc-tgtcgaactgtggttgttcgataggtat 75
||||||||||| |||||||||||| ||||| | |||||||||||||||||||||||||
Sbjct: 87 cctgtcgaactaccgcagttcgacaggtaccctatcgaactgtggttgttcgataggta- 29
Query: 76 ccctgtcgaaccgcggttgttcga 99
|| ||||||||| |||||||||||
Sbjct: 28 ccttgtcgaaccacggttgttcga 5
>49260_osa-miRf10045-akr:pmrd
Length = 103
Score = 87.7 bits (44), Expect = 2e-18
Identities = 85/96 (88%), Gaps = 2/96 (2%)
Strand = Plus / Minus
Query: 17 cctgtcgaactgacgcagttcgacatgtacc-tgtcgaactgtggttgttcgataggtat 75
||||||||||| |||||||||||| ||||| | |||||||||||||||||||||||||
Sbjct: 95 cctgtcgaactaccgcagttcgacaggtaccctatcgaactgtggttgttcgataggta- 37
Query: 76 ccctgtcgaaccgcggttgttcgacagggtgctaaa 111
| | ||||||| ||||||||||| |||||||||||
Sbjct: 36 ctttatcgaaccacggttgttcgatagggtgctaaa 1
>50502_osa-miRf11287-akr:pmrd
Length = 87
Score = 56.0 bits (28), Expect = 6e-09
Identities = 52/60 (86%)
Strand = Plus / Plus
Query: 46 cctgtcgaactgtggttgttcgataggtatccctgtcgaaccgcggttgttcgacagggt 105
|||||||||||| || |||||||||||| ||||||||||| | || ||||||||||||
Sbjct: 1 cctgtcgaactggggcagttcgataggtacccctgtcgaactggggcagttcgacagggt 60
Score = 40.1 bits (20), Expect = 4e-04
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 14 taccctgtcgaactgacgcagttcgaca 41
||||||||||||||| | ||||||||||
Sbjct: 61 taccctgtcgaactgccccagttcgaca 34
>49465_osa-miRf10250-akr:pmrd
Length = 99
Score = 56.0 bits (28), Expect = 6e-09
Identities = 52/60 (86%)
Strand = Plus / Plus
Query: 46 cctgtcgaactgtggttgttcgataggtatccctgtcgaaccgcggttgttcgacagggt 105
|||||||||||| || |||||||||||| ||||||||||| | || ||||||||||||
Sbjct: 7 cctgtcgaactggggcagttcgataggtacccctgtcgaactggggcagttcgacagggt 66
Score = 42.1 bits (21), Expect = 9e-05
Identities = 41/45 (91%), Gaps = 2/45 (4%)
Strand = Plus / Minus
Query: 14 taccctgtcgaactgacgcagttcgacatgta-cctgtcgaactg 57
||||||||||||||| | |||||||||| ||| ||||||||||||
Sbjct: 96 taccctgtcgaactgccccagttcgaca-gtaccctgtcgaactg 53
Score = 40.1 bits (20), Expect = 4e-04
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 14 taccctgtcgaactgacgcagttcgaca 41
||||||||||||||| | ||||||||||
Sbjct: 67 taccctgtcgaactgccccagttcgaca 40
>50692_osa-miRf11477-akr:pmrd
Length = 67
Score = 50.1 bits (25), Expect = 4e-07
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 77 cctgtcgaaccgcggttgttcgacagggt 105
|||||||||| ||||||||||||||||||
Sbjct: 67 cctgtcgaactgcggttgttcgacagggt 39
>50747_osa-miRf11532-akr:pmrd
Length = 102
Score = 48.1 bits (24), Expect = 1e-06
Identities = 80/96 (83%), Gaps = 2/96 (2%)
Strand = Plus / Minus
Query: 17 cctgtcgaactgacgcagttcgacatgta-cctgtcgaactgtggttgttcgataggtat 75
|||||||||||| ||||||||||| ||| ||| |||||||| || |||||| |||||
Sbjct: 95 cctgtcgaactggggcagttcgacaggtaccctttcgaactggggcagttcgacaggta- 37
Query: 76 ccctgtcgaaccgcggttgttcgacagggtgctaaa 111
|||| |||||| || ||||||||||||||||||
Sbjct: 36 ccctttcgaactgcctccgttcgacagggtgctaaa 1
Score = 40.1 bits (20), Expect = 4e-04
Identities = 39/44 (88%), Gaps = 1/44 (2%)
Strand = Plus / Plus
Query: 15 accctgtcgaactgacgcagttcgaca-tgtacctgtcgaactg 57
|||||||||||| || ||||||||| | |||||||||||||||
Sbjct: 7 accctgtcgaacggaggcagttcgaaagggtacctgtcgaactg 50
>48999_osa-miR439j:pmrd
Length = 125
Score = 42.1 bits (21), Expect = 9e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 79 tgtcgaaccgcggttgttcga 99
|||||||||||||||||||||
Sbjct: 93 tgtcgaaccgcggttgttcga 113
