miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>49124_osa-miR1440:pmrd
Length = 189
Score = 103 bits (52), Expect = 6e-23
Identities = 76/84 (90%)
Strand = Plus / Plus
Query: 96 cacttatgtttgaatgaaaagtgaggctgacatgtgcgttcggatggcatttgggaatga 155
||||| |||||||||| ||||||||||||||||||| | ||||||| |||||| |||||
Sbjct: 95 cacttttgtttgaatggaaagtgaggctgacatgtgggcccggatggtatttggtaatga 154
Query: 156 aaatttaggagagtggtatttgag 179
|||||| |||||||||||||||||
Sbjct: 155 aaatttgggagagtggtatttgag 178
Score = 77.8 bits (39), Expect = 3e-15
Identities = 57/63 (90%)
Strand = Plus / Minus
Query: 117 tgaggctgacatgtgcgttcggatggcatttgggaatgaaaatttaggagagtggtattt 176
||||||||||||||| | ||| ||| ||||||||||| |||||||||||||||||||||
Sbjct: 74 tgaggctgacatgtgggcccgggtggtatttgggaatggaaatttaggagagtggtattt 15
Query: 177 gag 179
|||
Sbjct: 14 gag 12
Score = 50.1 bits (25), Expect = 7e-07
Identities = 31/33 (93%)
Strand = Plus / Minus
Query: 40 agtgctcaaatgccactctcccaaatattcatt 72
||||||||||| |||||||||||||| ||||||
Sbjct: 182 agtgctcaaataccactctcccaaattttcatt 150
>50843_osa-miRf11628-akr:pmrd
Length = 101
Score = 61.9 bits (31), Expect = 2e-10
Identities = 46/51 (90%)
Strand = Plus / Minus
Query: 96 cacttatgtttgaatgaaaagtgaggctgacatgtgcgttcggatggcatt 146
||||| |||||||||| | ||||||||||||||||| || |||||||||||
Sbjct: 51 cacttttgtttgaatggagagtgaggctgacatgtgggtccggatggcatt 1
>51271_osa-miRf12056-akr:pmrd
Length = 115
Score = 60.0 bits (30), Expect = 8e-10
Identities = 51/58 (87%)
Strand = Plus / Minus
Query: 96 cacttatgtttgaatgaaaagtgaggctgacatgtgcgttcggatggcatttgggaat 153
||||| |||||||||| | ||||||||||||||||| | ||| ||||||||||||||
Sbjct: 58 cacttttgtttgaatggagagtgaggctgacatgtgggcccgggtggcatttgggaat 1
>49318_osa-miRf10103-akr:pmrd
Length = 106
Score = 56.0 bits (28), Expect = 1e-08
Identities = 34/36 (94%)
Strand = Plus / Minus
Query: 96 cacttatgtttgaatgaaaagtgaggctgacatgtg 131
||||| |||||||||| |||||||||||||||||||
Sbjct: 53 cacttttgtttgaatggaaagtgaggctgacatgtg 18
>51273_osa-miRf12058-akr:pmrd
Length = 105
Score = 50.1 bits (25), Expect = 7e-07
Identities = 46/53 (86%)
Strand = Plus / Minus
Query: 96 cacttatgtttgaatgaaaagtgaggctgacatgtgcgttcggatggcatttg 148
||||| |||||||||| | ||||||||||||||||| | ||| |||||||||
Sbjct: 53 cacttttgtttgaatggagagtgaggctgacatgtgggcccgggtggcatttg 1
>51272_osa-miRf12057-akr:pmrd
Length = 105
Score = 50.1 bits (25), Expect = 7e-07
Identities = 46/53 (86%)
Strand = Plus / Minus
Query: 96 cacttatgtttgaatgaaaagtgaggctgacatgtgcgttcggatggcatttg 148
||||| |||||||||| | ||||||||||||||||| | ||| |||||||||
Sbjct: 53 cacttttgtttgaatggagagtgaggctgacatgtgggcccgggtggcatttg 1
>49967_osa-miRf10752-akr:pmrd
Length = 93
Score = 48.1 bits (24), Expect = 3e-06
Identities = 33/36 (91%)
Strand = Plus / Minus
Query: 96 cacttatgtttgaatgaaaagtgaggctgacatgtg 131
||||| |||||||||| | |||||||||||||||||
Sbjct: 47 cacttttgtttgaatggagagtgaggctgacatgtg 12
>49966_osa-miRf10751-akr:pmrd
Length = 107
Score = 48.1 bits (24), Expect = 3e-06
Identities = 33/36 (91%)
Strand = Plus / Minus
Query: 96 cacttatgtttgaatgaaaagtgaggctgacatgtg 131
||||| |||||||||| | |||||||||||||||||
Sbjct: 54 cacttttgtttgaatggagagtgaggctgacatgtg 19
>49868_osa-miRf10653-akr:pmrd
Length = 106
Score = 48.1 bits (24), Expect = 3e-06
Identities = 42/48 (87%)
Strand = Plus / Plus
Query: 102 tgtttgaatgaaaagtgaggctgacatgtgcgttcggatggcatttgg 149
|||||||||| ||||||||||||||| ||| | ||| ||||||||||
Sbjct: 59 tgtttgaatggaaagtgaggctgacacgtgggcccgggtggcatttgg 106
>50946_osa-miRf11731-akr:pmrd
Length = 101
Score = 46.1 bits (23), Expect = 1e-05
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 96 cacttatgtttgaatgaaaagtgaggctgacatgt 130
||||| |||||||||| | ||||||||||||||||
Sbjct: 51 cacttttgtttgaatggagagtgaggctgacatgt 17
>50945_osa-miRf11730-akr:pmrd
Length = 105
Score = 46.1 bits (23), Expect = 1e-05
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 96 cacttatgtttgaatgaaaagtgaggctgacatgt 130
||||| |||||||||| | ||||||||||||||||
Sbjct: 53 cacttttgtttgaatggagagtgaggctgacatgt 87
>50944_osa-miRf11729-akr:pmrd
Length = 105
Score = 46.1 bits (23), Expect = 1e-05
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 96 cacttatgtttgaatgaaaagtgaggctgacatgt 130
||||| |||||||||| | ||||||||||||||||
Sbjct: 53 cacttttgtttgaatggagagtgaggctgacatgt 19
>49855_osa-miRf10640-akr:pmrd
Length = 106
Score = 46.1 bits (23), Expect = 1e-05
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 103 gtttgaatgaaaagtgaggctgacatgtgcgttcggatggcatttgg 149
||||||||| | |||||| |||||||||| | ||||||||||||||
Sbjct: 60 gtttgaatggagagtgagactgacatgtgggcccggatggcatttgg 106
>49316_osa-miRf10101-akr:pmrd
Length = 99
Score = 46.1 bits (23), Expect = 1e-05
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 96 cacttatgtttgaatgaaaagtgaggctgacatgt 130
||||| |||||||||| | ||||||||||||||||
Sbjct: 50 cacttttgtttgaatggagagtgaggctgacatgt 16
>49870_osa-miRf10655-akr:pmrd
Length = 94
Score = 44.1 bits (22), Expect = 4e-05
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 102 tgtttgaatgaaaagtgaggctgaca 127
|||||||||| |||||||||||||||
Sbjct: 42 tgtttgaatggaaagtgaggctgaca 17
>49869_osa-miRf10654-akr:pmrd
Length = 102
Score = 44.1 bits (22), Expect = 4e-05
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 102 tgtttgaatgaaaagtgaggctgaca 127
|||||||||| |||||||||||||||
Sbjct: 46 tgtttgaatggaaagtgaggctgaca 21
>49857_osa-miRf10642-akr:pmrd
Length = 104
Score = 44.1 bits (22), Expect = 4e-05
Identities = 40/46 (86%)
Strand = Plus / Minus
Query: 103 gtttgaatgaaaagtgaggctgacatgtgcgttcggatggcatttg 148
||||||||| | |||||| |||||||||| | |||||||||||||
Sbjct: 46 gtttgaatggagagtgagactgacatgtgggcccggatggcatttg 1
>49856_osa-miRf10641-akr:pmrd
Length = 104
Score = 44.1 bits (22), Expect = 4e-05
Identities = 40/46 (86%)
Strand = Plus / Minus
Query: 103 gtttgaatgaaaagtgaggctgacatgtgcgttcggatggcatttg 148
||||||||| | |||||| |||||||||| | |||||||||||||
Sbjct: 46 gtttgaatggagagtgagactgacatgtgggcccggatggcatttg 1
>49309_osa-miRf10094-akr:pmrd
Length = 107
Score = 44.1 bits (22), Expect = 4e-05
Identities = 46/54 (85%)
Strand = Plus / Minus
Query: 96 cacttatgtttgaatgaaaagtgaggctgacatgtgcgttcggatggcatttgg 149
||||| |||||||||| | | ||||||||||||||| | ||| ||||||||||
Sbjct: 54 cacttttgtttgaatggagactgaggctgacatgtgggcccgggtggcatttgg 1
>49308_osa-miRf10093-akr:pmrd
Length = 107
Score = 44.1 bits (22), Expect = 4e-05
Identities = 46/54 (85%)
Strand = Plus / Plus
Query: 96 cacttatgtttgaatgaaaagtgaggctgacatgtgcgttcggatggcatttgg 149
||||| |||||||||| | | ||||||||||||||| | ||| ||||||||||
Sbjct: 54 cacttttgtttgaatggagactgaggctgacatgtgggcccgggtggcatttgg 107
