miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>50746_osa-miRf11531-akr:pmrd
Length = 106
Score = 58.0 bits (29), Expect = 2e-09
Identities = 53/61 (86%)
Strand = Plus / Plus
Query: 33 ggtgtaagtggttaacccgtgaaactcacttatagataaaagtaagcttcgaacccactt 92
||||||||||| ||||||| ||||| ||||||||||| ||| ||||| ||| |||||||
Sbjct: 3 ggtgtaagtggctaacccgcgaaacccacttatagattaaaataagccgcgagcccactt 62
Query: 93 a 93
|
Sbjct: 63 a 63
>50893_osa-miRf11678-akr:pmrd
Length = 88
Score = 50.1 bits (25), Expect = 5e-07
Identities = 31/33 (93%)
Strand = Plus / Minus
Query: 35 tgtaagtggttaacccgtgaaactcacttatag 67
||||||||||||||||| ||||| |||||||||
Sbjct: 83 tgtaagtggttaacccgcgaaacccacttatag 51
>50196_osa-miRf10981-akr:pmrd
Length = 110
Score = 48.1 bits (24), Expect = 2e-06
Identities = 84/104 (80%)
Strand = Plus / Plus
Query: 33 ggtgtaagtggttaacccgtgaaactcacttatagataaaagtaagcttcgaacccactt 92
||||||||||| ||||||| ||||| ||||||||| ||| ||||| ||||||| |||
Sbjct: 5 ggtgtaagtggctaacccgcgaaacccacttataggctaaaataagccgcgaacccgctt 64
Query: 93 actttaacctattaataggtttgcggtttacccaggtacacccc 136
| ||| ||||| ||| |||| |||| | ||||| ||||||||
Sbjct: 65 attttgacctaaaaatgggttcgcggctgacccacttacacccc 108
>50606_osa-miRf11391-akr:pmrd
Length = 110
Score = 46.1 bits (23), Expect = 8e-06
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 33 ggtgtaagtggttaacccgtgaaactcacttatag 67
||||||||||| ||||||| ||||| |||||||||
Sbjct: 106 ggtgtaagtggctaacccgcgaaacccacttatag 72
>50588_osa-miRf11373-akr:pmrd
Length = 112
Score = 46.1 bits (23), Expect = 8e-06
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 33 ggtgtaagtggttaacccgtgaaactcacttatag 67
||||||||||| ||||||| |||||| ||||||||
Sbjct: 6 ggtgtaagtggctaacccgcgaaacttacttatag 40
>50296_osa-miRf11081-akr:pmrd
Length = 110
Score = 46.1 bits (23), Expect = 8e-06
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 33 ggtgtaagtggttaacccgtgaaactcacttatag 67
||||||||||| ||||||| ||||| |||||||||
Sbjct: 106 ggtgtaagtggctaacccgcgaaacccacttatag 72
>49458_osa-miRf10243-akr:pmrd
Length = 116
Score = 44.1 bits (22), Expect = 3e-05
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 33 ggtgtaagtggttaacccgtgaaactcacttata 66
||||||||||| ||||||| ||||| ||||||||
Sbjct: 8 ggtgtaagtggctaacccgcgaaacccacttata 41
>51261_osa-miRf12046-akr:pmrd
Length = 87
Score = 40.1 bits (20), Expect = 5e-04
Identities = 30/32 (93%), Gaps = 1/32 (3%)
Strand = Plus / Plus
Query: 33 ggtgtaagtggttaacccgtgaaactcactta 64
||||||||||| |||||||| |||||||||||
Sbjct: 5 ggtgtaagtggctaacccgt-aaactcactta 35
