miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>49004_osa-miR442:pmrd
Length = 233
Score = 131 bits (66), Expect = 1e-31
Identities = 103/114 (90%), Gaps = 6/114 (5%)
Strand = Plus / Minus
Query: 2 taaaccgcgagacgaatttattcagcctaattaatccgtcattagcaaatgttactatag 61
||||| |||||||||||||||| |||||||||||||||||||||||||||||| ||
Sbjct: 175 taaactgcgagacgaatttattaagcctaattaatccgtcattagcaaatgtt--ta--- 121
Query: 62 tctgtagcaccacattgtcaaatcatagagtaattaggcttaaaagattcgtct 115
||||||||||||||||||| ||||| ||| |||||||||||||||||||||||
Sbjct: 120 -ctgtagcaccacattgtcagatcatggagcaattaggcttaaaagattcgtct 68
>50895_osa-miRf11680-akr:pmrd
Length = 145
Score = 107 bits (54), Expect = 2e-24
Identities = 100/114 (87%), Gaps = 6/114 (5%)
Strand = Plus / Minus
Query: 2 taaaccgcgagacgaatttattcagcctaattaatccgtcattagcaaatgttactatag 61
|||||||||||||||||||||| |||||||||||||| ||||||||||||||| ||
Sbjct: 130 taaaccgcgagacgaatttattaagcctaattaatccatcattagcaaatgtt--ta--- 76
Query: 62 tctgtagcaccacattgtcaaatcatagagtaattaggcttaaaagattcgtct 115
|| ||||||||||||||||||| || | | ||||||||||||||||| |||||
Sbjct: 75 -ctttagcaccacattgtcaaattatggtgcaattaggcttaaaagatccgtct 23
>50021_osa-miRf10806-akr:pmrd
Length = 123
Score = 69.9 bits (35), Expect = 4e-13
Identities = 47/51 (92%)
Strand = Plus / Plus
Query: 3 aaaccgcgagacgaatttattcagcctaattaatccgtcattagcaaatgt 53
|||||||||||||||| | || |||||||||||||||||||||||| ||||
Sbjct: 3 aaaccgcgagacgaatcttttgagcctaattaatccgtcattagcacatgt 53
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 92 taattaggcttaaaagattcgtct 115
||||||||||||||||||||||||
Sbjct: 90 taattaggcttaaaagattcgtct 113
Score = 40.1 bits (20), Expect = 4e-04
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 92 taattaggcttaaaagattcgtct 115
|||||||||| |||||||||||||
Sbjct: 34 taattaggctcaaaagattcgtct 11
>50149_osa-miRf10934-akr:pmrd
Length = 143
Score = 65.9 bits (33), Expect = 7e-12
Identities = 85/101 (84%), Gaps = 6/101 (5%)
Strand = Plus / Minus
Query: 15 gaatttattcagcctaattaatccgtcattagcaaatgttactatagtctgtagcaccac 74
|||||||| |||||||||||||||||||||||||||||| ||| |||| ||| ||
Sbjct: 116 gaatttatgaagcctaattaatccgtcattagcaaatgtt--tat----tgtaccacaac 63
Query: 75 attgtcaaatcatagagtaattaggcttaaaagattcgtct 115
||||| |||| || | | |||||||| ||||||||||||||
Sbjct: 62 attgttaaattatggcgcaattaggcctaaaagattcgtct 22
>49008_osa-miR445a:pmrd
Length = 268
Score = 65.9 bits (33), Expect = 7e-12
Identities = 48/53 (90%)
Strand = Plus / Plus
Query: 63 ctgtagcaccacattgtcaaatcatagagtaattaggcttaaaagattcgtct 115
|||||||| |||||||||||||||| | |||||||| || |||||||||||||
Sbjct: 131 ctgtagcatcacattgtcaaatcatggtgtaattagactcaaaagattcgtct 183
Score = 40.1 bits (20), Expect = 4e-04
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 92 taattaggcttaaaagattcgtct 115
||||||||||||||| ||||||||
Sbjct: 108 taattaggcttaaaaaattcgtct 85
>49455_osa-miRf10240-akr:pmrd
Length = 128
Score = 61.9 bits (31), Expect = 1e-10
Identities = 46/51 (90%)
Strand = Plus / Minus
Query: 3 aaaccgcgagacgaatttattcagcctaattaatccgtcattagcaaatgt 53
|||||||||||||||| | || |||||||||||||||| ||||||| ||||
Sbjct: 122 aaaccgcgagacgaatcttttgagcctaattaatccgttattagcacatgt 72
Score = 44.1 bits (22), Expect = 2e-05
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 82 aatcatagagtaattaggcttaaaagattcgtct 115
||||||| | |||||||||| |||||||||||||
Sbjct: 48 aatcatatactaattaggctcaaaagattcgtct 15
Score = 40.1 bits (20), Expect = 4e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 92 taattaggcttaaaagattcgtct 115
|||||||||| |||||||||||||
Sbjct: 91 taattaggctcaaaagattcgtct 114
>51249_osa-miRf12034-akr:pmrd
Length = 121
Score = 60.0 bits (30), Expect = 4e-10
Identities = 42/46 (91%)
Strand = Plus / Minus
Query: 3 aaaccgcgagacgaatttattcagcctaattaatccgtcattagca 48
||||||||||| |||| | || ||||||||||||||||||||||||
Sbjct: 119 aaaccgcgagatgaatctcttgagcctaattaatccgtcattagca 74
Score = 48.1 bits (24), Expect = 2e-06
Identities = 33/36 (91%)
Strand = Plus / Minus
Query: 82 aatcatagagtaattaggcttaaaagattcgtcttg 117
|||||| || |||||||||| |||||||||||||||
Sbjct: 45 aatcatggactaattaggctcaaaagattcgtcttg 10
>49733_osa-miRf10518-akr:pmrd
Length = 122
Score = 56.0 bits (28), Expect = 6e-09
Identities = 40/44 (90%)
Strand = Plus / Plus
Query: 3 aaaccgcgagacgaatttattcagcctaattaatccgtcattag 46
|||||||||||||||| | || ||||||||||| ||||||||||
Sbjct: 4 aaaccgcgagacgaatcttttgagcctaattaagccgtcattag 47
Score = 44.1 bits (22), Expect = 2e-05
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 82 aatcatagagtaattaggcttaaaagattcgtct 115
||||| ||| |||||||||| |||||||||||||
Sbjct: 78 aatcacagactaattaggctcaaaagattcgtct 111
Score = 40.1 bits (20), Expect = 4e-04
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 92 taattaggcttaaaagattcgtct 115
|||||||||| |||||||||||||
Sbjct: 35 taattaggctcaaaagattcgtct 12
>51000_osa-miRf11785-akr:pmrd
Length = 128
Score = 54.0 bits (27), Expect = 3e-08
Identities = 39/43 (90%)
Strand = Plus / Plus
Query: 3 aaaccgcgagacgaatttattcagcctaattaatccgtcatta 45
|||||||||||||||| | || ||||||||||| |||||||||
Sbjct: 7 aaaccgcgagacgaatcttttgagcctaattaagccgtcatta 49
Score = 40.1 bits (20), Expect = 4e-04
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 92 taattaggcttaaaagattcgtct 115
|||||||||| |||||||||||||
Sbjct: 38 taattaggctcaaaagattcgtct 15
>49010_osa-miR445c:pmrd
Length = 260
Score = 54.0 bits (27), Expect = 3e-08
Identities = 39/43 (90%)
Strand = Plus / Plus
Query: 82 aatcatagagtaattaggcttaaaagattcgtcttgtaaatta 124
|||||| | ||||||||||||||||||||||||| || |||||
Sbjct: 138 aatcatggtgtaattaggcttaaaagattcgtctcgtgaatta 180
Score = 46.1 bits (23), Expect = 6e-06
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 8 gcgagacgaatttattcagcctaattaatcc 38
||||||||||||| || ||||||||||||||
Sbjct: 87 gcgagacgaattttttaagcctaattaatcc 117
Score = 40.1 bits (20), Expect = 4e-04
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 92 taattaggcttaaaagattcgtct 115
||||||||||||||| ||||||||
Sbjct: 113 taattaggcttaaaaaattcgtct 90
>50516_osa-miRf11301-akr:pmrd
Length = 139
Score = 52.0 bits (26), Expect = 1e-07
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 82 aatcatagagtaattaggcttaaaagattcgtct 115
||||||||| |||||||||| |||||||||||||
Sbjct: 33 aatcatagactaattaggctcaaaagattcgtct 66
>49652_osa-miRf10437-akr:pmrd
Length = 120
Score = 48.1 bits (24), Expect = 2e-06
Identities = 39/44 (88%)
Strand = Plus / Minus
Query: 3 aaaccgcgagacgaatttattcagcctaattaatccgtcattag 46
|||||||||||||||| | || ||| |||||||||| |||||||
Sbjct: 118 aaaccgcgagacgaatcttttgagcataattaatccatcattag 75
>51304_osa-miRf12089-akr:pmrd
Length = 120
Score = 46.1 bits (23), Expect = 6e-06
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 92 taattaggcttaaaagattcgtcttgt 118
|||||||||| ||||||||||||||||
Sbjct: 34 taattaggctcaaaagattcgtcttgt 8
Score = 46.1 bits (23), Expect = 6e-06
Identities = 38/43 (88%)
Strand = Plus / Plus
Query: 11 agacgaatttattcagcctaattaatccgtcattagcaaatgt 53
|||||||| | || |||||||||||| ||||||||||| ||||
Sbjct: 11 agacgaatcttttgagcctaattaattcgtcattagcacatgt 53
>49015_osa-miR445h:pmrd
Length = 277
Score = 46.1 bits (23), Expect = 6e-06
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 8 gcgagacgaatttattcagcctaattaatcc 38
||||||||||||| || ||||||||||||||
Sbjct: 95 gcgagacgaattttttaagcctaattaatcc 125
Score = 40.1 bits (20), Expect = 4e-04
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 92 taattaggcttaaaagattcgtct 115
||||||||||||||| ||||||||
Sbjct: 121 taattaggcttaaaaaattcgtct 98
>49014_osa-miR445g:pmrd
Length = 275
Score = 46.1 bits (23), Expect = 6e-06
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 8 gcgagacgaatttattcagcctaattaatcc 38
||||||||||||| || ||||||||||||||
Sbjct: 94 gcgagacgaattttttaagcctaattaatcc 124
Score = 40.1 bits (20), Expect = 4e-04
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 92 taattaggcttaaaagattcgtct 115
||||||||||||||| ||||||||
Sbjct: 120 taattaggcttaaaaaattcgtct 97
>49012_osa-miR445e:pmrd
Length = 265
Score = 46.1 bits (23), Expect = 6e-06
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 8 gcgagacgaatttattcagcctaattaatcc 38
||||||||||||| || ||||||||||||||
Sbjct: 89 gcgagacgaattttttaagcctaattaatcc 119
Score = 40.1 bits (20), Expect = 4e-04
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 92 taattaggcttaaaagattcgtct 115
||||||||||||||| ||||||||
Sbjct: 115 taattaggcttaaaaaattcgtct 92
>51205_osa-miRf11990-akr:pmrd
Length = 135
Score = 40.1 bits (20), Expect = 4e-04
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 7 cgcgagacgaatttattcagcctaattaatcc 38
|||||||| ||| |||| ||||||||||||||
Sbjct: 10 cgcgagacaaatctattgagcctaattaatcc 41
