miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>50305_osa-miRf11090-akr:pmrd
Length = 116
Score = 46.1 bits (23), Expect = 3e-06
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 28 ggatatgtcacatccacccaaatcccttata 58
||||||||||| |||||| ||||||||||||
Sbjct: 59 ggatatgtcacctccaccaaaatcccttata 89
>51255_osa-miRf12040-akr:pmrd
Length = 102
Score = 44.1 bits (22), Expect = 1e-05
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 1 catctacccaaaatcccttataatatggga 30
|||| ||||||||||||||||| |||||||
Sbjct: 49 catcgacccaaaatcccttatattatggga 20
Score = 38.2 bits (19), Expect = 9e-04
Identities = 28/31 (90%)
Strand = Plus / Plus
Query: 34 gtcacatccacccaaatcccttataatatgg 64
||||||| |||| |||||||||||| |||||
Sbjct: 51 gtcacatacaccaaaatcccttatattatgg 81
Score = 38.2 bits (19), Expect = 9e-04
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 8 ccaaaatcccttataatatggga 30
||||||||||||||| |||||||
Sbjct: 61 ccaaaatcccttatattatggga 83
>51254_osa-miRf12039-akr:pmrd
Length = 102
Score = 44.1 bits (22), Expect = 1e-05
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 1 catctacccaaaatcccttataatatggga 30
|||| ||||||||||||||||| |||||||
Sbjct: 49 catcgacccaaaatcccttatattatggga 20
Score = 38.2 bits (19), Expect = 9e-04
Identities = 28/31 (90%)
Strand = Plus / Plus
Query: 34 gtcacatccacccaaatcccttataatatgg 64
||||||| |||| |||||||||||| |||||
Sbjct: 51 gtcacatacaccaaaatcccttatattatgg 81
Score = 38.2 bits (19), Expect = 9e-04
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 8 ccaaaatcccttataatatggga 30
||||||||||||||| |||||||
Sbjct: 61 ccaaaatcccttatattatggga 83
>51250_osa-miRf12035-akr:pmrd
Length = 119
Score = 44.1 bits (22), Expect = 1e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 1 catctacccaaaatcccttataatatggga 30
|||| ||||||||||||||||| |||||||
Sbjct: 73 catccacccaaaatcccttatattatggga 102
Score = 38.2 bits (19), Expect = 9e-04
Identities = 29/31 (93%), Gaps = 1/31 (3%)
Strand = Plus / Plus
Query: 35 tcacatccaccc-aaatcccttataatatgg 64
|||||||||||| |||||||||||| |||||
Sbjct: 70 tcacatccacccaaaatcccttatattatgg 100
>49067_osa-miR818a:pmrd
Length = 144
Score = 44.1 bits (22), Expect = 1e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 1 catctacccaaaatcccttataatatggga 30
||||||| |||||||||||||| |||||||
Sbjct: 106 catctactcaaaatcccttatattatggga 135
>49237_osa-miRf10022-akr:pmrd
Length = 138
Score = 38.2 bits (19), Expect = 9e-04
Identities = 29/31 (93%), Gaps = 1/31 (3%)
Strand = Plus / Minus
Query: 35 tcacatccacccaa-atcccttataatatgg 64
|||||||||||||| |||||||||| |||||
Sbjct: 34 tcacatccacccaagatcccttatattatgg 4
>49069_osa-miR818c:pmrd
Length = 176
Score = 38.2 bits (19), Expect = 9e-04
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 8 ccaaaatcccttataatatggga 30
||||||||||||||| |||||||
Sbjct: 138 ccaaaatcccttatattatggga 160
>49068_osa-miR818b:pmrd
Length = 113
Score = 38.2 bits (19), Expect = 9e-04
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 8 ccaaaatcccttataatatggga 30
||||||||||||||| |||||||
Sbjct: 85 ccaaaatcccttatattatggga 107
