miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>49061_osa-miR814c:pmrd
Length = 83
Score = 83.8 bits (42), Expect = 3e-17
Identities = 63/70 (90%)
Strand = Plus / Plus
Query: 25 gatgtgacactttatagtacaacgaatctggacagaaaacatatctagattcgttatact 84
|||||||||||| |||||||||||||||||||||| || ||| || |||||||||||||
Sbjct: 5 gatgtgacacttcatagtacaacgaatctggacaggaagcatgtccggattcgttatact 64
Query: 85 atgaagtgtc 94
|| |||||||
Sbjct: 65 ataaagtgtc 74
Score = 42.1 bits (21), Expect = 9e-05
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 30 gacactttatagtacaacgaatctggaca 58
|||||||||||||| |||||||| |||||
Sbjct: 74 gacactttatagtataacgaatccggaca 46
>49059_osa-miR814a:pmrd
Length = 97
Score = 79.8 bits (40), Expect = 4e-16
Identities = 76/88 (86%)
Strand = Plus / Minus
Query: 21 accggatgtgacactttatagtacaacgaatctggacagaaaacatatctagattcgtta 80
||||||| |||||||| |||||||||||||||||||||| | || |||||||||
Sbjct: 90 accggatatgacacttcatagtacaacgaatctggacaggcttactgtccagattcgttg 31
Query: 81 tactatgaagtgtctcgttcggtactag 108
|||||||||||||||||| |||||||||
Sbjct: 30 tactatgaagtgtctcgtccggtactag 3
Score = 75.8 bits (38), Expect = 7e-15
Identities = 65/74 (87%)
Strand = Plus / Plus
Query: 21 accggatgtgacactttatagtacaacgaatctggacagaaaacatatctagattcgtta 80
|||||| | ||||||| |||||||||||||||||||||| || | | || |||||||||
Sbjct: 8 accggacgagacacttcatagtacaacgaatctggacagtaagcctgtccagattcgttg 67
Query: 81 tactatgaagtgtc 94
||||||||||||||
Sbjct: 68 tactatgaagtgtc 81
>49060_osa-miR814b:pmrd
Length = 74
Score = 52.0 bits (26), Expect = 1e-07
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 21 accggatgtgacactttatagtacaacgaatctggaca 58
|||||| | ||||||| |||||||||||||||||||||
Sbjct: 1 accggacgagacacttcatagtacaacgaatctggaca 38
Score = 50.1 bits (25), Expect = 4e-07
Identities = 31/33 (93%)
Strand = Plus / Minus
Query: 71 agattcgttatactatgaagtgtctcgttcggt 103
||||||||| |||||||||||||||||| ||||
Sbjct: 33 agattcgttgtactatgaagtgtctcgtccggt 1
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 30 gacactttatagtacaacgaatct 53
||||||||||||||||||||||||
Sbjct: 65 gacactttatagtacaacgaatct 42
Score = 40.1 bits (20), Expect = 4e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 71 agattcgttatactatgaagtgtctcgt 98
||||||||| |||||| |||||||||||
Sbjct: 42 agattcgttgtactataaagtgtctcgt 69
>50995_osa-miRf11780-akr:pmrd
Length = 116
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 39 tagtacaacgaatctggacaga 60
||||||||||||||||||||||
Sbjct: 53 tagtacaacgaatctggacaga 74
>49466_osa-miRf10251-akr:pmrd
Length = 83
Score = 40.1 bits (20), Expect = 4e-04
Identities = 32/36 (88%)
Strand = Plus / Plus
Query: 24 ggatgtgacactttatagtacaacgaatctggacag 59
||||||||||| | |||||| ||||||||||||||
Sbjct: 15 ggatgtgacacatcctagtactacgaatctggacag 50
