miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>49782_osa-miRf10567-akr:pmrd
Length = 95
Score = 69.9 bits (35), Expect = 6e-13
Identities = 56/63 (88%)
Strand = Plus / Plus
Query: 34 attgttgttagggttccatctatcccgggccattaaatacactgtgcatcctatagcact 93
||||||||||||||||| || || ||| ||| ||||||||||||| |||||||||| |||
Sbjct: 1 attgttgttagggttccgtccattccgcgccgttaaatacactgttcatcctatagaact 60
Query: 94 taa 96
|||
Sbjct: 61 taa 63
>51074_osa-miRf11859-akr:pmrd
Length = 91
Score = 61.9 bits (31), Expect = 1e-10
Identities = 52/59 (88%)
Strand = Plus / Minus
Query: 41 ttagggttccatctatcccgggccattaaatacactgtgcatcctatagcacttaatgg 99
||||||||||||| || ||| ||| ||||||||| ||| |||||||||| |||||||||
Sbjct: 86 ttagggttccatccattccgtgccgttaaatacagtgttcatcctatagaacttaatgg 28
>50488_osa-miRf11273-akr:pmrd
Length = 123
Score = 52.0 bits (26), Expect = 1e-07
Identities = 32/34 (94%)
Strand = Plus / Minus
Query: 109 aacggaaccctaatggcgatgacattttttggac 142
||||||||||||||||||||| ||||||| ||||
Sbjct: 34 aacggaaccctaatggcgatggcatttttgggac 1
Score = 50.1 bits (25), Expect = 5e-07
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 110 acggaaccctaatggcgatgacattttttggac 142
|||||||||||||||||||| ||||||| ||||
Sbjct: 91 acggaaccctaatggcgatggcatttttgggac 123
>51301_osa-miRf12086-akr:pmrd
Length = 97
Score = 50.1 bits (25), Expect = 5e-07
Identities = 49/57 (85%)
Strand = Plus / Minus
Query: 40 gttagggttccatctatcccgggccattaaatacactgtgcatcctatagcacttaa 96
||||||||||| || || || ||| ||||||||||||| |||||||||| ||||||
Sbjct: 90 gttagggttccgtccattccatgccgttaaatacactgttcatcctatagaacttaa 34
>50463_osa-miRf11248-akr:pmrd
Length = 107
Score = 46.1 bits (23), Expect = 8e-06
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 66 ttaaatacactgtgcatcctatagcacttaa 96
||||||||||||| |||| ||||||||||||
Sbjct: 39 ttaaatacactgttcatcatatagcacttaa 69
>50994_osa-miRf11779-akr:pmrd
Length = 107
Score = 42.1 bits (21), Expect = 1e-04
Identities = 42/49 (85%)
Strand = Plus / Minus
Query: 40 gttagggttccatctatcccgggccattaaatacactgtgcatcctata 88
||||||||||| || || ||| ||| ||||||||||||| ||| |||||
Sbjct: 95 gttagggttccgtccattccgtgccgttaaatacactgttcattctata 47
>49299_osa-miRf10084-akr:pmrd
Length = 101
Score = 42.1 bits (21), Expect = 1e-04
Identities = 48/57 (84%)
Strand = Plus / Plus
Query: 40 gttagggttccatctatcccgggccattaaatacactgtgcatcctatagcacttaa 96
||||||||||| || || || ||| ||||||||||| | |||||||||| ||||||
Sbjct: 10 gttagggttccgtccattccatgccgttaaatacactattcatcctatagaacttaa 66
>50042_osa-miRf10827-akr:pmrd
Length = 122
Score = 40.1 bits (20), Expect = 5e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 66 ttaaatacactgtgcatcctatag 89
||||||||||||| ||||||||||
Sbjct: 46 ttaaatacactgttcatcctatag 69
>50001_osa-miRf10786-akr:pmrd
Length = 88
Score = 40.1 bits (20), Expect = 5e-04
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 110 acggaaccctaatggcgatgacattttt 137
|||||||||||| |||||||| ||||||
Sbjct: 79 acggaaccctaacggcgatgatattttt 52
