miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>48431_cre-miR905:pmrd
Length = 293
Score = 581 bits (293), Expect = e-166
Identities = 293/293 (100%)
Strand = Plus / Plus
Query: 1 tgccgggctggggccgggcgggctgtgatcgacctggaggtccctggatatggcaccttc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tgccgggctggggccgggcgggctgtgatcgacctggaggtccctggatatggcaccttc 60
Query: 61 gaggttgtggtcacacactcagtccggggacctcggcccagttgctggtgctatgctctg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 gaggttgtggtcacacactcagtccggggacctcggcccagttgctggtgctatgctctg 120
Query: 121 actacccgacaagcaagcttggggccgccccccacattggtcctgcggtagtcagaacag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 actacccgacaagcaagcttggggccgccccccacattggtcctgcggtagtcagaacag 180
Query: 181 agcactagcgactgggccgaggtaacccgcactgagtgcgtgaccacaacctcgaaggtg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 agcactagcgactgggccgaggtaacccgcactgagtgcgtgaccacaacctcgaaggtg 240
Query: 241 ccatatccagggacctccaggtcgatcacagcccgcccggccccagcgcggca 293
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 ccatatccagggacctccaggtcgatcacagcccgcccggccccagcgcggca 293
Score = 281 bits (142), Expect = 1e-76
Identities = 258/294 (87%), Gaps = 2/294 (0%)
Strand = Plus / Minus
Query: 1 tgccgggctggggccgggcgggctgtgatcgacctggaggtccctggatatggcaccttc 60
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 293 tgccgcgctggggccgggcgggctgtgatcgacctggaggtccctggatatggcaccttc 234
Query: 61 gaggttgtggtcacacactcagtccgggg-acctcggcccagttgctggtgctatgctct 119
|||||||||||||| |||||||| |||| ||||||||||||| ||| ||||| || |||
Sbjct: 233 gaggttgtggtcacgcactcagtgcgggttacctcggcccagtcgctagtgctctgttct 174
Query: 120 gactacccgacaagcaagcttggggccgccccccacattggtcctgcggtagtcagaaca 179
||||||| | | ||| | |||| || |||| | ||| | | |||||||||| ||
Sbjct: 173 gactaccgcaggaccaatgtggggggcggccccaagcttgcttgtcgggtagtcagagca 114
Query: 180 gagcactagcgactgggccgaggtaacccgcactgagtgcgtgaccacaacctcgaaggt 239
||||| ||| ||||||||||||| |||| |||||||| ||||||||||||||||||||
Sbjct: 113 tagcaccagcaactgggccgaggtc-cccggactgagtgtgtgaccacaacctcgaaggt 55
Query: 240 gccatatccagggacctccaggtcgatcacagcccgcccggccccagcgcggca 293
|||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 54 gccatatccagggacctccaggtcgatcacagcccgcccggccccagcccggca 1
>48430_cre-miR905:pmrd
Length = 293
Score = 581 bits (293), Expect = e-166
Identities = 293/293 (100%)
Strand = Plus / Plus
Query: 1 tgccgggctggggccgggcgggctgtgatcgacctggaggtccctggatatggcaccttc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tgccgggctggggccgggcgggctgtgatcgacctggaggtccctggatatggcaccttc 60
Query: 61 gaggttgtggtcacacactcagtccggggacctcggcccagttgctggtgctatgctctg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 gaggttgtggtcacacactcagtccggggacctcggcccagttgctggtgctatgctctg 120
Query: 121 actacccgacaagcaagcttggggccgccccccacattggtcctgcggtagtcagaacag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 actacccgacaagcaagcttggggccgccccccacattggtcctgcggtagtcagaacag 180
Query: 181 agcactagcgactgggccgaggtaacccgcactgagtgcgtgaccacaacctcgaaggtg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 agcactagcgactgggccgaggtaacccgcactgagtgcgtgaccacaacctcgaaggtg 240
Query: 241 ccatatccagggacctccaggtcgatcacagcccgcccggccccagcgcggca 293
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 ccatatccagggacctccaggtcgatcacagcccgcccggccccagcgcggca 293
Score = 281 bits (142), Expect = 1e-76
Identities = 258/294 (87%), Gaps = 2/294 (0%)
Strand = Plus / Minus
Query: 1 tgccgggctggggccgggcgggctgtgatcgacctggaggtccctggatatggcaccttc 60
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 293 tgccgcgctggggccgggcgggctgtgatcgacctggaggtccctggatatggcaccttc 234
Query: 61 gaggttgtggtcacacactcagtccgggg-acctcggcccagttgctggtgctatgctct 119
|||||||||||||| |||||||| |||| ||||||||||||| ||| ||||| || |||
Sbjct: 233 gaggttgtggtcacgcactcagtgcgggttacctcggcccagtcgctagtgctctgttct 174
Query: 120 gactacccgacaagcaagcttggggccgccccccacattggtcctgcggtagtcagaaca 179
||||||| | | ||| | |||| || |||| | ||| | | |||||||||| ||
Sbjct: 173 gactaccgcaggaccaatgtggggggcggccccaagcttgcttgtcgggtagtcagagca 114
Query: 180 gagcactagcgactgggccgaggtaacccgcactgagtgcgtgaccacaacctcgaaggt 239
||||| ||| ||||||||||||| |||| |||||||| ||||||||||||||||||||
Sbjct: 113 tagcaccagcaactgggccgaggtc-cccggactgagtgtgtgaccacaacctcgaaggt 55
Query: 240 gccatatccagggacctccaggtcgatcacagcccgcccggccccagcgcggca 293
|||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 54 gccatatccagggacctccaggtcgatcacagcccgcccggccccagcccggca 1
