miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>54574_smo-miR160a:pmrd
Length = 106
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 18 tctgcctggctccctgtatgccatctg 44
|||||||||||||||||||||||||||
Sbjct: 9 tctgcctggctccctgtatgccatctg 35
>51365_ppt-miR160g:pmrd
Length = 138
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 19 ctgcctggctccctgtatgccatctgcg 46
|||||||||||| |||||||||||||||
Sbjct: 29 ctgcctggctccttgtatgccatctgcg 56
>51364_ppt-miR160f:pmrd
Length = 138
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 19 ctgcctggctccctgtatgccatctgcg 46
|||||||||||||||||||||| |||||
Sbjct: 29 ctgcctggctccctgtatgccacctgcg 56
>51359_ppt-miR160a:pmrd
Length = 99
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 19 ctgcctggctccctgtatgccatctgcg 46
|||||||||||||||||||||| |||||
Sbjct: 10 ctgcctggctccctgtatgccacctgcg 37
>54778_vvi-miR160a:pmrd
Length = 103
Score = 46.1 bits (23), Expect = 6e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 17 atctgcctggctccctgtatgccatct 43
||||||||||||||||| |||||||||
Sbjct: 8 atctgcctggctccctgaatgccatct 34
>48397_bra-miR160a:pmrd
Length = 127
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 20 tgcctggctccctgtatgccatc 42
|||||||||||||||||||||||
Sbjct: 26 tgcctggctccctgtatgccatc 48
>48396_bra-miR160a:pmrd
Length = 127
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 20 tgcctggctccctgtatgccatc 42
|||||||||||||||||||||||
Sbjct: 26 tgcctggctccctgtatgccatc 48
>54783_vvi-miR160f:pmrd
Length = 102
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 20 tgcctggctccctgtatgccat 41
||||||||||||||||||||||
Sbjct: 11 tgcctggctccctgtatgccat 32
>54782_vvi-miR160e:pmrd
Length = 104
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 18 tctgcctggctccctgtatgccatct 43
|||||||||||||||| |||||||||
Sbjct: 9 tctgcctggctccctgaatgccatct 34
>54781_vvi-miR160d:pmrd
Length = 102
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 20 tgcctggctccctgtatgccat 41
||||||||||||||||||||||
Sbjct: 11 tgcctggctccctgtatgccat 32
>54779_vvi-miR160b:pmrd
Length = 104
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 18 tctgcctggctccctgtatgccatct 43
|||||||||||||||| |||||||||
Sbjct: 9 tctgcctggctccctgaatgccatct 34
>54575_smo-miR160b:pmrd
Length = 108
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 19 ctgcctggctccctgtatgcca 40
||||||||||||||||||||||
Sbjct: 12 ctgcctggctccctgtatgcca 33
>54541_sly-miR160a:pmrd
Length = 129
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 20 tgcctggctccctgtatgccat 41
||||||||||||||||||||||
Sbjct: 20 tgcctggctccctgtatgccat 41
>51613_ptc-miR160f:pmrd
Length = 100
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 18 tctgcctggctccctgtatgccatct 43
|||||||||||||||| |||||||||
Sbjct: 9 tctgcctggctccctgaatgccatct 34
>51610_ptc-miR160c:pmrd
Length = 98
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 20 tgcctggctccctgtatgccat 41
||||||||||||||||||||||
Sbjct: 11 tgcctggctccctgtatgccat 32
>51609_ptc-miR160b:pmrd
Length = 98
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 20 tgcctggctccctgtatgccat 41
||||||||||||||||||||||
Sbjct: 11 tgcctggctccctgtatgccat 32
>51367_ppt-miR160i:pmrd
Length = 139
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 21 gcctggctccctgtatgccatctgcg 46
|||||||||||||||||||| |||||
Sbjct: 31 gcctggctccctgtatgccacctgcg 56
>51363_ppt-miR160e:pmrd
Length = 138
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 19 ctgcctggctccctgtatgcca 40
||||||||||||||||||||||
Sbjct: 29 ctgcctggctccctgtatgcca 50
>51360_ppt-miR160b:pmrd
Length = 103
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 21 gcctggctccctgtatgccatctgcg 46
|||||||||||||||||||| |||||
Sbjct: 12 gcctggctccctgtatgccaactgcg 37
>48704_mtr-miR160e:pmrd
Length = 91
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 20 tgcctggctccctgtatgccat 41
||||||||||||||||||||||
Sbjct: 6 tgcctggctccctgtatgccat 27
>48703_mtr-miR160d:pmrd
Length = 91
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 20 tgcctggctccctgtatgccat 41
||||||||||||||||||||||
Sbjct: 6 tgcctggctccctgtatgccat 27
>48702_mtr-miR160b:pmrd
Length = 91
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 20 tgcctggctccctgtatgccat 41
||||||||||||||||||||||
Sbjct: 6 tgcctggctccctgtatgccat 27
>48542_gma-miR160a:pmrd
Length = 119
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 20 tgcctggctccctgtatgccat 41
||||||||||||||||||||||
Sbjct: 21 tgcctggctccctgtatgccat 42
>47213_ath-miRf10113-akr:pmrd
Length = 85
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 20 tgcctggctccctgtatgccat 41
||||||||||||||||||||||
Sbjct: 4 tgcctggctccctgtatgccat 25
>46934_ath-miR160a:pmrd
Length = 85
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 20 tgcctggctccctgtatgccat 41
||||||||||||||||||||||
Sbjct: 4 tgcctggctccctgtatgccat 25
>46865_aqc-miR160b:pmrd
Length = 82
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 20 tgcctggctccctgtatgccat 41
||||||||||||||||||||||
Sbjct: 1 tgcctggctccctgtatgccat 22
>54947_zma-miR160m:pmrd
Length = 81
Score = 42.1 bits (21), Expect = 9e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 20 tgcctggctccctgtatgcca 40
|||||||||||||||||||||
Sbjct: 1 tgcctggctccctgtatgcca 21
>54946_zma-miR160i:pmrd
Length = 81
Score = 42.1 bits (21), Expect = 9e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 20 tgcctggctccctgtatgcca 40
|||||||||||||||||||||
Sbjct: 2 tgcctggctccctgtatgcca 22
>54945_zma-miR160h:pmrd
Length = 86
Score = 42.1 bits (21), Expect = 9e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 20 tgcctggctccctgtatgcca 40
|||||||||||||||||||||
Sbjct: 1 tgcctggctccctgtatgcca 21
>54944_zma-miR160g:pmrd
Length = 86
Score = 42.1 bits (21), Expect = 9e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 20 tgcctggctccctgtatgcca 40
|||||||||||||||||||||
Sbjct: 1 tgcctggctccctgtatgcca 21
>54942_zma-miR160e:pmrd
Length = 94
Score = 42.1 bits (21), Expect = 9e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 20 tgcctggctccctgtatgcca 40
|||||||||||||||||||||
Sbjct: 9 tgcctggctccctgtatgcca 29
>54941_zma-miR160d:pmrd
Length = 142
Score = 42.1 bits (21), Expect = 9e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 20 tgcctggctccctgtatgcca 40
|||||||||||||||||||||
Sbjct: 21 tgcctggctccctgtatgcca 41
>54940_zma-miR160c:pmrd
Length = 100
Score = 42.1 bits (21), Expect = 9e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 20 tgcctggctccctgtatgcca 40
|||||||||||||||||||||
Sbjct: 7 tgcctggctccctgtatgcca 27
>54939_zma-miR160b:pmrd
Length = 121
Score = 42.1 bits (21), Expect = 9e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 20 tgcctggctccctgtatgcca 40
|||||||||||||||||||||
Sbjct: 21 tgcctggctccctgtatgcca 41
>54938_zma-miR160a:pmrd
Length = 104
Score = 42.1 bits (21), Expect = 9e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 20 tgcctggctccctgtatgcca 40
|||||||||||||||||||||
Sbjct: 10 tgcctggctccctgtatgcca 30
>54780_vvi-miR160c:pmrd
Length = 106
Score = 42.1 bits (21), Expect = 9e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 20 tgcctggctccctgtatgcca 40
|||||||||||||||||||||
Sbjct: 11 tgcctggctccctgtatgcca 31
>54759_ttu-miR160a:pmrd
Length = 87
Score = 42.1 bits (21), Expect = 9e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 20 tgcctggctccctgtatgcca 40
|||||||||||||||||||||
Sbjct: 1 tgcctggctccctgtatgcca 21
>54675_tae-miR160:pmrd
Length = 148
Score = 42.1 bits (21), Expect = 9e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 20 tgcctggctccctgtatgcca 40
|||||||||||||||||||||
Sbjct: 22 tgcctggctccctgtatgcca 42
>54408_sbi-miR160e:pmrd
Length = 95
Score = 42.1 bits (21), Expect = 9e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 20 tgcctggctccctgtatgcca 40
|||||||||||||||||||||
Sbjct: 1 tgcctggctccctgtatgcca 21
>54407_sbi-miR160d:pmrd
Length = 100
Score = 42.1 bits (21), Expect = 9e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 20 tgcctggctccctgtatgcca 40
|||||||||||||||||||||
Sbjct: 1 tgcctggctccctgtatgcca 21
>54406_sbi-miR160c:pmrd
Length = 83
Score = 42.1 bits (21), Expect = 9e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 20 tgcctggctccctgtatgcca 40
|||||||||||||||||||||
Sbjct: 1 tgcctggctccctgtatgcca 21
>54405_sbi-miR160b:pmrd
Length = 82
Score = 42.1 bits (21), Expect = 9e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 20 tgcctggctccctgtatgcca 40
|||||||||||||||||||||
Sbjct: 1 tgcctggctccctgtatgcca 21
>54404_sbi-miR160a:pmrd
Length = 84
Score = 42.1 bits (21), Expect = 9e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 20 tgcctggctccctgtatgcca 40
|||||||||||||||||||||
Sbjct: 1 tgcctggctccctgtatgcca 21
>53874_ptc-miRf12052-akr:pmrd
Length = 110
Score = 42.1 bits (21), Expect = 9e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 20 tgcctggctccctgtatgcca 40
|||||||||||||||||||||
Sbjct: 12 tgcctggctccctgtatgcca 32
>51612_ptc-miR160e:pmrd
Length = 100
Score = 42.1 bits (21), Expect = 9e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 19 ctgcctggctccctgtatgccatct 43
||||||||||||||| |||||||||
Sbjct: 10 ctgcctggctccctgaatgccatct 34
>51611_ptc-miR160d:pmrd
Length = 103
Score = 42.1 bits (21), Expect = 9e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 20 tgcctggctccctgtatgcca 40
|||||||||||||||||||||
Sbjct: 11 tgcctggctccctgtatgcca 31
>51608_ptc-miR160a:pmrd
Length = 102
Score = 42.1 bits (21), Expect = 9e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 20 tgcctggctccctgtatgcca 40
|||||||||||||||||||||
Sbjct: 11 tgcctggctccctgtatgcca 31
>51334_pga-miR160:pmrd
Length = 80
Score = 42.1 bits (21), Expect = 9e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 20 tgcctggctccctgtatgcca 40
|||||||||||||||||||||
Sbjct: 1 tgcctggctccctgtatgcca 21
>48833_osa-miR160n:pmrd
Length = 131
Score = 42.1 bits (21), Expect = 9e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 20 tgcctggctccctgtatgcca 40
|||||||||||||||||||||
Sbjct: 1 tgcctggctccctgtatgcca 21
>48832_osa-miR160m:pmrd
Length = 82
Score = 42.1 bits (21), Expect = 9e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 20 tgcctggctccctgtatgcca 40
|||||||||||||||||||||
Sbjct: 1 tgcctggctccctgtatgcca 21
>48829_osa-miR160d:pmrd
Length = 142
Score = 42.1 bits (21), Expect = 9e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 20 tgcctggctccctgtatgcca 40
|||||||||||||||||||||
Sbjct: 8 tgcctggctccctgtatgcca 28
>48828_osa-miR160c:pmrd
Length = 99
Score = 42.1 bits (21), Expect = 9e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 20 tgcctggctccctgtatgcca 40
|||||||||||||||||||||
Sbjct: 7 tgcctggctccctgtatgcca 27
>48827_osa-miR160b:pmrd
Length = 139
Score = 42.1 bits (21), Expect = 9e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 20 tgcctggctccctgtatgcca 40
|||||||||||||||||||||
Sbjct: 30 tgcctggctccctgtatgcca 50
>48826_osa-miR160a:pmrd
Length = 88
Score = 42.1 bits (21), Expect = 9e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 20 tgcctggctccctgtatgcca 40
|||||||||||||||||||||
Sbjct: 4 tgcctggctccctgtatgcca 24
>48791_oba-miR160:pmrd
Length = 90
Score = 42.1 bits (21), Expect = 9e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 20 tgcctggctccctgtatgcca 40
|||||||||||||||||||||
Sbjct: 4 tgcctggctccctgtatgcca 24
>48658_hvv-miR160a:pmrd
Length = 344
Score = 42.1 bits (21), Expect = 9e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 20 tgcctggctccctgtatgcca 40
|||||||||||||||||||||
Sbjct: 324 tgcctggctccctgtatgcca 344
>47338_ath-miRf10238-akr:pmrd
Length = 89
Score = 42.1 bits (21), Expect = 9e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 20 tgcctggctccctgtatgcca 40
|||||||||||||||||||||
Sbjct: 5 tgcctggctccctgtatgcca 25
>46936_ath-miR160c:pmrd
Length = 89
Score = 42.1 bits (21), Expect = 9e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 20 tgcctggctccctgtatgcca 40
|||||||||||||||||||||
Sbjct: 5 tgcctggctccctgtatgcca 25
>46935_ath-miR160b:pmrd
Length = 89
Score = 42.1 bits (21), Expect = 9e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 20 tgcctggctccctgtatgcca 40
|||||||||||||||||||||
Sbjct: 5 tgcctggctccctgtatgcca 25
>54943_zma-miR160f:pmrd
Length = 116
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 20 tgcctggctccctgtatgcc 39
||||||||||||||||||||
Sbjct: 21 tgcctggctccctgtatgcc 40
>54760_ttu-miR160b:pmrd
Length = 218
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 20 tgcctggctccctgtatgcc 39
||||||||||||||||||||
Sbjct: 1 tgcctggctccctgtatgcc 20
>54528_sce-miR160:pmrd
Length = 180
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 20 tgcctggctccctgtatgcc 39
||||||||||||||||||||
Sbjct: 1 tgcctggctccctgtatgcc 20
>51614_ptc-miR160g:pmrd
Length = 98
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 17 atctgcctggctccctgtatgcca 40
||||||||||||||||| ||||||
Sbjct: 8 atctgcctggctccctggatgcca 31
>48831_osa-miR160f:pmrd
Length = 100
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 19 ctgcctggctccctgtatgccatc 42
||||||||||||||| ||||||||
Sbjct: 10 ctgcctggctccctgaatgccatc 33
