miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>51566_pta-miR408:pmrd
Length = 86
Score = 170 bits (86), Expect = 1e-43
Identities = 86/86 (100%)
Strand = Plus / Plus
Query: 1 gagacagggacgagttagggcatgggagttgcatatgcagaaacgtctgcttctgccatt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gagacagggacgagttagggcatgggagttgcatatgcagaaacgtctgcttctgccatt 60
Query: 61 cttatgcactgcctcttccctggctc 86
||||||||||||||||||||||||||
Sbjct: 61 cttatgcactgcctcttccctggctc 86
>54892_vvi-miR408:pmrd
Length = 107
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 64 atgcactgcctcttccctggctc 86
|||||||||||||||||||||||
Sbjct: 77 atgcactgcctcttccctggctc 99
>48428_cpt-miR408:pmrd
Length = 100
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 64 atgcactgcctcttccctggctc 86
|||||||||||||||||||||||
Sbjct: 70 atgcactgcctcttccctggctc 92
>48142_ath-miRf11042-akr:pmrd
Length = 99
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 64 atgcactgcctcttccctggctc 86
|||||||||||||||||||||||
Sbjct: 26 atgcactgcctcttccctggctc 4
>47031_ath-miR408:pmrd
Length = 218
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 64 atgcactgcctcttccctggctc 86
|||||||||||||||||||||||
Sbjct: 120 atgcactgcctcttccctggctc 142
>55104_zma-miR408:pmrd
Length = 191
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 65 tgcactgcctcttccctggctc 86
||||||||||||||||||||||
Sbjct: 153 tgcactgcctcttccctggctc 174
>54690_tae-miR408:pmrd
Length = 187
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 65 tgcactgcctcttccctggctc 86
||||||||||||||||||||||
Sbjct: 137 tgcactgcctcttccctggctc 158
>54649_sof-miR408d:pmrd
Length = 215
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 65 tgcactgcctcttccctggctc 86
||||||||||||||||||||||
Sbjct: 177 tgcactgcctcttccctggctc 198
>54648_sof-miR408c:pmrd
Length = 286
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 65 tgcactgcctcttccctggctc 86
||||||||||||||||||||||
Sbjct: 248 tgcactgcctcttccctggctc 269
>54647_sof-miR408b:pmrd
Length = 286
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 65 tgcactgcctcttccctggctc 86
||||||||||||||||||||||
Sbjct: 248 tgcactgcctcttccctggctc 269
>54646_sof-miR408a:pmrd
Length = 283
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 65 tgcactgcctcttccctggctc 86
||||||||||||||||||||||
Sbjct: 245 tgcactgcctcttccctggctc 266
>54585_smo-miR408:pmrd
Length = 109
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 64 atgcactgcctcttccctggct 85
||||||||||||||||||||||
Sbjct: 76 atgcactgcctcttccctggct 97
>51762_ptc-miR408:pmrd
Length = 105
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 64 atgcactgcctcttccctggct 85
||||||||||||||||||||||
Sbjct: 76 atgcactgcctcttccctggct 97
>51397_ppt-miR408b:pmrd
Length = 144
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 64 atgcactgcctcttccctggct 85
||||||||||||||||||||||
Sbjct: 93 atgcactgcctcttccctggct 114
>51347_ppe-miR408:pmrd
Length = 105
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 64 atgcactgcctcttccctggct 85
||||||||||||||||||||||
Sbjct: 75 atgcactgcctcttccctggct 96
>48975_osa-miR408:pmrd
Length = 213
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 65 tgcactgcctcttccctggctc 86
||||||||||||||||||||||
Sbjct: 154 tgcactgcctcttccctggctc 175
>46892_aqc-miR408:pmrd
Length = 87
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 64 atgcactgcctcttccctggct 85
||||||||||||||||||||||
Sbjct: 22 atgcactgcctcttccctggct 1
>54499_sbi-miR408:pmrd
Length = 205
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 65 tgcactgcctcttccctggct 85
|||||||||||||||||||||
Sbjct: 185 tgcactgcctcttccctggct 205
>54389_rco-miR408:pmrd
Length = 129
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 65 tgcactgcctcttccctggct 85
|||||||||||||||||||||
Sbjct: 91 tgcactgcctcttccctggct 111
>48317_bdi-miR408:pmrd
Length = 133
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 64 atgcactgcctcttccctgg 83
||||||||||||||||||||
Sbjct: 69 atgcactgcctcttccctgg 88
>53677_ptc-miRf11855-akr:pmrd
Length = 79
Score = 38.2 bits (19), Expect = 0.001
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 64 atgcactgcctcttccctg 82
|||||||||||||||||||
Sbjct: 61 atgcactgcctcttccctg 79
