miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>51574_pta-miR946b:pmrd
Length = 261
Score = 517 bits (261), Expect = e-147
Identities = 261/261 (100%)
Strand = Plus / Plus
Query: 1 cagagtgtatggatgtggatatggaagggttagtaaacagtacaaaacccatttaataga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 cagagtgtatggatgtggatatggaagggttagtaaacagtacaaaacccatttaataga 60
Query: 61 gattccatcggagcatcattgttggctgttagatcaagcaactgtattttgatggccaca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 gattccatcggagcatcattgttggctgttagatcaagcaactgtattttgatggccaca 120
Query: 121 ctcattgaatgggttgcttgttttgcttttaaccagccctttttctatccaactgcctgt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 ctcattgaatgggttgcttgttttgcttttaaccagccctttttctatccaactgcctgt 180
Query: 181 attttgatggccatgctcattaaatgggttacctgttagctattcaccagcccttctcct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 attttgatggccatgctcattaaatgggttacctgttagctattcaccagcccttctcct 240
Query: 241 atccacaactgtactagtttg 261
|||||||||||||||||||||
Sbjct: 241 atccacaactgtactagtttg 261
>51573_pta-miR946a:pmrd
Length = 172
Score = 89.7 bits (45), Expect = 1e-18
Identities = 75/85 (88%)
Strand = Plus / Plus
Query: 177 ctgtattttgatggccatgctcattaaatgggttacctgttagctattcaccagcccttc 236
||||| || ||||||||| ||||||||||||||| ||||| ||| | |||||||||||
Sbjct: 88 ctgtaattcgatggccatactcattaaatgggttggctgtttgctctgtaccagcccttc 147
Query: 237 tcctatccacaactgtactagtttg 261
|||||||||||| ||||||||||||
Sbjct: 148 tcctatccacaattgtactagtttg 172
Score = 77.8 bits (39), Expect = 4e-15
Identities = 51/55 (92%)
Strand = Plus / Plus
Query: 1 cagagtgtatggatgtggatatggaagggttagtaaacagtacaaaacccattta 55
||||||||||||||||||||| ||||||||||||||| ||| ||||||||||||
Sbjct: 1 cagagtgtatggatgtggatagagaagggttagtaaacggtagaaaacccattta 55
>51572_pta-miR946a:pmrd
Length = 172
Score = 89.7 bits (45), Expect = 1e-18
Identities = 75/85 (88%)
Strand = Plus / Plus
Query: 177 ctgtattttgatggccatgctcattaaatgggttacctgttagctattcaccagcccttc 236
||||| || ||||||||| ||||||||||||||| ||||| ||| | |||||||||||
Sbjct: 88 ctgtaattcgatggccatactcattaaatgggttggctgtttgctctgtaccagcccttc 147
Query: 237 tcctatccacaactgtactagtttg 261
|||||||||||| ||||||||||||
Sbjct: 148 tcctatccacaattgtactagtttg 172
Score = 77.8 bits (39), Expect = 4e-15
Identities = 51/55 (92%)
Strand = Plus / Plus
Query: 1 cagagtgtatggatgtggatatggaagggttagtaaacagtacaaaacccattta 55
||||||||||||||||||||| ||||||||||||||| ||| ||||||||||||
Sbjct: 1 cagagtgtatggatgtggatagagaagggttagtaaacggtagaaaacccattta 55
