miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>51389_ppt-miR319d:pmrd
Length = 170
Score = 337 bits (170), Expect = 2e-93
Identities = 170/170 (100%)
Strand = Plus / Plus
Query: 1 cagcgtggagctttcttcggtccaatagtggctgagtcgaaggttgtgctgctgccgact 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 cagcgtggagctttcttcggtccaatagtggctgagtcgaaggttgtgctgctgccgact 60
Query: 61 caaacttccggcttccctatccaacccctggtatggaatccgaatgtctgatacgggagc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 caaacttccggcttccctatccaacccctggtatggaatccgaatgtctgatacgggagc 120
Query: 121 tgttcaatctccggcttagcatctcttggactgaagggagctccccgctg 170
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 tgttcaatctccggcttagcatctcttggactgaagggagctccccgctg 170
>51388_ppt-miR319d:pmrd
Length = 170
Score = 337 bits (170), Expect = 2e-93
Identities = 170/170 (100%)
Strand = Plus / Plus
Query: 1 cagcgtggagctttcttcggtccaatagtggctgagtcgaaggttgtgctgctgccgact 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 cagcgtggagctttcttcggtccaatagtggctgagtcgaaggttgtgctgctgccgact 60
Query: 61 caaacttccggcttccctatccaacccctggtatggaatccgaatgtctgatacgggagc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 caaacttccggcttccctatccaacccctggtatggaatccgaatgtctgatacgggagc 120
Query: 121 tgttcaatctccggcttagcatctcttggactgaagggagctccccgctg 170
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 tgttcaatctccggcttagcatctcttggactgaagggagctccccgctg 170
>51387_ppt-miR319d:pmrd
Length = 170
Score = 337 bits (170), Expect = 2e-93
Identities = 170/170 (100%)
Strand = Plus / Plus
Query: 1 cagcgtggagctttcttcggtccaatagtggctgagtcgaaggttgtgctgctgccgact 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 cagcgtggagctttcttcggtccaatagtggctgagtcgaaggttgtgctgctgccgact 60
Query: 61 caaacttccggcttccctatccaacccctggtatggaatccgaatgtctgatacgggagc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 caaacttccggcttccctatccaacccctggtatggaatccgaatgtctgatacgggagc 120
Query: 121 tgttcaatctccggcttagcatctcttggactgaagggagctccccgctg 170
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 tgttcaatctccggcttagcatctcttggactgaagggagctccccgctg 170
>51385_ppt-miR319b:pmrd
Length = 160
Score = 139 bits (70), Expect = 8e-34
Identities = 116/130 (89%), Gaps = 1/130 (0%)
Strand = Plus / Plus
Query: 36 gtcgaaggttgtgctgctgccgactcaaacttccggcttccctatc-caacccctggtat 94
|||||||||||| | |||||||||||||||||||||||||| |||| | || | || |||
Sbjct: 30 gtcgaaggttgtaccgctgccgactcaaacttccggcttccatatcacgacgcgtgatat 89
Query: 95 ggaatccgaatgtctgatacgggagctgttcaatctccggcttagcatctcttggactga 154
|||||||||| ||||||| ||||||||| || |||||| | |||||||||||||||||||
Sbjct: 90 ggaatccgaaggtctgatccgggagctgatcgatctccaggttagcatctcttggactga 149
Query: 155 agggagctcc 164
||||||||||
Sbjct: 150 agggagctcc 159
>51386_ppt-miR319c:pmrd
Length = 189
Score = 85.7 bits (43), Expect = 1e-17
Identities = 132/159 (83%), Gaps = 2/159 (1%)
Strand = Plus / Plus
Query: 7 ggagctttcttcggtccaatagtggctgagtcgaaggttgtgctgctgccgactcaaact 66
||||||| ||||||| ||||||||||||| || ||||| ||||||||||||||||||
Sbjct: 18 ggagcttccttcggttcaatagtggctgatatga-ggttgcactgctgccgactcaaact 76
Query: 67 tccggcttccctatccaacccctggtatggaatccgaatgtctgatacgggagctgttca 126
|||||||||||| || | ||| | |||||||||||||||||| ||||||||| |
Sbjct: 77 tccggcttccctctctta-gaatggcagggaatccgaatgtctgatgcgggagctgagcg 135
Query: 127 atctccggcttagcatctcttggactgaagggagctccc 165
||| | || ||| ||||||||||||||||||||||||
Sbjct: 136 gtcttcaactcagcttctcttggactgaagggagctccc 174
>51390_ppt-miR319e:pmrd
Length = 174
Score = 60.0 bits (30), Expect = 6e-10
Identities = 98/118 (83%), Gaps = 2/118 (1%)
Strand = Plus / Plus
Query: 49 ctgctgccgactcaaacttccggcttccctatccaacccctggtatggaatccgaatgtc 108
|||||||||| ||||||||||||||||||| || | | | | | ||||||||||||||
Sbjct: 51 ctgctgccgattcaaacttccggcttccctttcttaacac-gacagggaatccgaatgtc 109
Query: 109 tgatacgggagctgttcaatctccggc-ttagcatctcttggactgaagggagctccc 165
|||| |||||||||| | ||| | | ||||| |||||||||||||||||||||||
Sbjct: 110 tgatgcgggagctgtgcggtcttcaactttagcgcctcttggactgaagggagctccc 167
>51384_ppt-miR319a:pmrd
Length = 169
Score = 46.1 bits (23), Expect = 9e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 142 tctcttggactgaagggagctcc 164
|||||||||||||||||||||||
Sbjct: 145 tctcttggactgaagggagctcc 167
>54843_vvi-miR319b:pmrd
Length = 194
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 144 tcttggactgaagggagctccc 165
||||||||||||||||||||||
Sbjct: 161 tcttggactgaagggagctccc 182
>48687_ltu-miR319:pmrd
Length = 167
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 144 tcttggactgaagggagctccc 165
||||||||||||||||||||||
Sbjct: 146 tcttggactgaagggagctccc 167
>54846_vvi-miR319f:pmrd
Length = 193
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 145 cttggactgaagggagctccc 165
|||||||||||||||||||||
Sbjct: 161 cttggactgaagggagctccc 181
>54844_vvi-miR319c:pmrd
Length = 182
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 145 cttggactgaagggagctccc 165
|||||||||||||||||||||
Sbjct: 150 cttggactgaagggagctccc 170
>54686_tae-miR319a:pmrd
Length = 196
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 145 cttggactgaagggagctccc 165
|||||||||||||||||||||
Sbjct: 176 cttggactgaagggagctccc 196
>54583_smo-miR319:pmrd
Length = 215
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 145 cttggactgaagggagctccc 165
|||||||||||||||||||||
Sbjct: 185 cttggactgaagggagctccc 205
>51710_ptc-miR319d:pmrd
Length = 193
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 145 cttggactgaagggagctccc 165
|||||||||||||||||||||
Sbjct: 164 cttggactgaagggagctccc 184
>51709_ptc-miR319c:pmrd
Length = 196
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 145 cttggactgaagggagctccc 165
|||||||||||||||||||||
Sbjct: 167 cttggactgaagggagctccc 187
>51707_ptc-miR319a:pmrd
Length = 188
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 145 cttggactgaagggagctccc 165
|||||||||||||||||||||
Sbjct: 159 cttggactgaagggagctccc 179
>48573_gma-miR319b:pmrd
Length = 208
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 145 cttggactgaagggagctccc 165
|||||||||||||||||||||
Sbjct: 169 cttggactgaagggagctccc 189
>48572_gma-miR319a:pmrd
Length = 207
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 145 cttggactgaagggagctccc 165
|||||||||||||||||||||
Sbjct: 168 cttggactgaagggagctccc 188
>46993_ath-miR319b:pmrd
Length = 172
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 145 cttggactgaagggagctccc 165
|||||||||||||||||||||
Sbjct: 151 cttggactgaagggagctccc 171
>46884_aqc-miR319:pmrd
Length = 177
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 145 cttggactgaagggagctccc 165
|||||||||||||||||||||
Sbjct: 154 cttggactgaagggagctccc 174
>54847_vvi-miR319g:pmrd
Length = 222
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 146 ttggactgaagggagctccc 165
||||||||||||||||||||
Sbjct: 192 ttggactgaagggagctccc 211
>54754_tar-miR159:pmrd
Length = 192
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 146 ttggactgaagggagctccc 165
||||||||||||||||||||
Sbjct: 161 ttggactgaagggagctccc 180
>54670_svi-miR159:pmrd
Length = 191
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 146 ttggactgaagggagctccc 165
||||||||||||||||||||
Sbjct: 161 ttggactgaagggagctccc 180
>54391_rin-miR159:pmrd
Length = 192
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 146 ttggactgaagggagctccc 165
||||||||||||||||||||
Sbjct: 161 ttggactgaagggagctccc 180
>54380_pvu-miR319c:pmrd
Length = 734
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 145 cttggactgaagggagctcc 164
||||||||||||||||||||
Sbjct: 409 cttggactgaagggagctcc 428
>51713_ptc-miR319g:pmrd
Length = 204
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 145 cttggactgaagggagctcc 164
||||||||||||||||||||
Sbjct: 175 cttggactgaagggagctcc 194
>51712_ptc-miR319f:pmrd
Length = 202
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 145 cttggactgaagggagctcc 164
||||||||||||||||||||
Sbjct: 173 cttggactgaagggagctcc 192
>51708_ptc-miR319b:pmrd
Length = 185
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 146 ttggactgaagggagctccc 165
||||||||||||||||||||
Sbjct: 157 ttggactgaagggagctccc 176
>51351_ppl-miR319:pmrd
Length = 204
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 145 cttggactgaagggagctcc 164
||||||||||||||||||||
Sbjct: 173 cttggactgaagggagctcc 192
>48788_nof-miR159:pmrd
Length = 192
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 146 ttggactgaagggagctccc 165
||||||||||||||||||||
Sbjct: 161 ttggactgaagggagctccc 180
>48694_mma-miR159:pmrd
Length = 192
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 146 ttggactgaagggagctccc 165
||||||||||||||||||||
Sbjct: 161 ttggactgaagggagctccc 180
>48479_fal-miR159:pmrd
Length = 192
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 146 ttggactgaagggagctccc 165
||||||||||||||||||||
Sbjct: 161 ttggactgaagggagctccc 180
>48478_ech-miR159:pmrd
Length = 192
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 146 ttggactgaagggagctccc 165
||||||||||||||||||||
Sbjct: 161 ttggactgaagggagctccc 180
>48476_dso-miR159:pmrd
Length = 192
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 146 ttggactgaagggagctccc 165
||||||||||||||||||||
Sbjct: 161 ttggactgaagggagctccc 180
>48429_crb-miR159:pmrd
Length = 194
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 146 ttggactgaagggagctccc 165
||||||||||||||||||||
Sbjct: 163 ttggactgaagggagctccc 182
>48422_cor-miR159:pmrd
Length = 193
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 146 ttggactgaagggagctccc 165
||||||||||||||||||||
Sbjct: 162 ttggactgaagggagctccc 181
>48421_cmi-miR159:pmrd
Length = 193
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 146 ttggactgaagggagctccc 165
||||||||||||||||||||
Sbjct: 162 ttggactgaagggagctccc 181
>48415_bvl-miR159:pmrd
Length = 192
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 146 ttggactgaagggagctccc 165
||||||||||||||||||||
Sbjct: 161 ttggactgaagggagctccc 180
>47656_ath-miRf10556-akr:pmrd
Length = 203
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 146 ttggactgaagggagctccc 165
||||||||||||||||||||
Sbjct: 37 ttggactgaagggagctccc 18
>46992_ath-miR319a:pmrd
Length = 176
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 146 ttggactgaagggagctccc 165
||||||||||||||||||||
Sbjct: 154 ttggactgaagggagctccc 173
>46860_ape-miR159:pmrd
Length = 192
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 146 ttggactgaagggagctccc 165
||||||||||||||||||||
Sbjct: 161 ttggactgaagggagctccc 180
>46856_ahi-miR159:pmrd
Length = 192
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 146 ttggactgaagggagctccc 165
||||||||||||||||||||
Sbjct: 161 ttggactgaagggagctccc 180
>46855_aha-miR159:pmrd
Length = 192
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 146 ttggactgaagggagctccc 165
||||||||||||||||||||
Sbjct: 161 ttggactgaagggagctccc 180
>46846_acb-miR159:pmrd
Length = 191
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 146 ttggactgaagggagctccc 165
||||||||||||||||||||
Sbjct: 160 ttggactgaagggagctccc 179
