miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>51390_ppt-miR319e:pmrd
Length = 174
Score = 345 bits (174), Expect = 7e-96
Identities = 174/174 (100%)
Strand = Plus / Plus
Query: 1 ctagccgtgggagctccttccggttcaatagtggctgatgtgaggttgcactgctgccga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ctagccgtgggagctccttccggttcaatagtggctgatgtgaggttgcactgctgccga 60
Query: 61 ttcaaacttccggcttccctttcttaacacgacagggaatccgaatgtctgatgcgggag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ttcaaacttccggcttccctttcttaacacgacagggaatccgaatgtctgatgcgggag 120
Query: 121 ctgtgcggtcttcaactttagcgcctcttggactgaagggagctcccaagtctt 174
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 ctgtgcggtcttcaactttagcgcctcttggactgaagggagctcccaagtctt 174
>51386_ppt-miR319c:pmrd
Length = 189
Score = 198 bits (100), Expect = 1e-51
Identities = 152/168 (90%), Gaps = 1/168 (0%)
Strand = Plus / Plus
Query: 7 gtgggagctccttccggttcaatagtggctgatgtgaggttgcactgctgccgattcaaa 66
||||||||| | | ||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct: 15 gtgggagcttccttcggttcaatagtggctgatatgaggttgcactgctgccgactcaaa 74
Query: 67 cttccggcttccctttcttaacacgacagggaatccgaatgtctgatgcgggagctgtgc 126
|||||||||||||| ||||| | | ||||||||||||||||||||||||||||||| ||
Sbjct: 75 cttccggcttccctctcttagaatggcagggaatccgaatgtctgatgcgggagctgagc 134
Query: 127 ggtcttcaactttagcgcctcttggactgaagggagctcccaagtctt 174
|||||||||| | ||| |||||||||||||||||||||||| |||||
Sbjct: 135 ggtcttcaac-tcagcttctcttggactgaagggagctcccatgtctt 181
>51389_ppt-miR319d:pmrd
Length = 170
Score = 60.0 bits (30), Expect = 6e-10
Identities = 98/118 (83%), Gaps = 2/118 (1%)
Strand = Plus / Plus
Query: 51 ctgctgccgattcaaacttccggcttccctttcttaacac-gacagggaatccgaatgtc 109
|||||||||| ||||||||||||||||||| || | | | | | ||||||||||||||
Sbjct: 49 ctgctgccgactcaaacttccggcttccctatccaacccctggtatggaatccgaatgtc 108
Query: 110 tgatgcgggagctgtgcggtcttcaactttagcgcctcttggactgaagggagctccc 167
|||| |||||||||| | ||| | | ||||| |||||||||||||||||||||||
Sbjct: 109 tgatacgggagctgttcaatctccggc-ttagcatctcttggactgaagggagctccc 165
>51388_ppt-miR319d:pmrd
Length = 170
Score = 60.0 bits (30), Expect = 6e-10
Identities = 98/118 (83%), Gaps = 2/118 (1%)
Strand = Plus / Plus
Query: 51 ctgctgccgattcaaacttccggcttccctttcttaacac-gacagggaatccgaatgtc 109
|||||||||| ||||||||||||||||||| || | | | | | ||||||||||||||
Sbjct: 49 ctgctgccgactcaaacttccggcttccctatccaacccctggtatggaatccgaatgtc 108
Query: 110 tgatgcgggagctgtgcggtcttcaactttagcgcctcttggactgaagggagctccc 167
|||| |||||||||| | ||| | | ||||| |||||||||||||||||||||||
Sbjct: 109 tgatacgggagctgttcaatctccggc-ttagcatctcttggactgaagggagctccc 165
>51387_ppt-miR319d:pmrd
Length = 170
Score = 60.0 bits (30), Expect = 6e-10
Identities = 98/118 (83%), Gaps = 2/118 (1%)
Strand = Plus / Plus
Query: 51 ctgctgccgattcaaacttccggcttccctttcttaacac-gacagggaatccgaatgtc 109
|||||||||| ||||||||||||||||||| || | | | | | ||||||||||||||
Sbjct: 49 ctgctgccgactcaaacttccggcttccctatccaacccctggtatggaatccgaatgtc 108
Query: 110 tgatgcgggagctgtgcggtcttcaactttagcgcctcttggactgaagggagctccc 167
|||| |||||||||| | ||| | | ||||| |||||||||||||||||||||||
Sbjct: 109 tgatacgggagctgttcaatctccggc-ttagcatctcttggactgaagggagctccc 165
>51385_ppt-miR319b:pmrd
Length = 160
Score = 48.1 bits (24), Expect = 2e-06
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 43 aggttgcactgctgccgattcaaacttccggcttcc 78
|||||| || |||||||| |||||||||||||||||
Sbjct: 35 aggttgtaccgctgccgactcaaacttccggcttcc 70
Score = 46.1 bits (23), Expect = 9e-06
Identities = 60/71 (84%), Gaps = 1/71 (1%)
Strand = Plus / Plus
Query: 96 ggaatccgaatgtctgatgcgggagctgtgcggtcttcaactttagcgcctcttggactg 155
|||||||||| ||||||| ||||||||| || ||| || || ||| |||||||||||
Sbjct: 90 ggaatccgaaggtctgatccgggagctgatcgatctccaggtt-agcatctcttggactg 148
Query: 156 aagggagctcc 166
|||||||||||
Sbjct: 149 aagggagctcc 159
>54843_vvi-miR319b:pmrd
Length = 194
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 146 tcttggactgaagggagctccc 167
||||||||||||||||||||||
Sbjct: 161 tcttggactgaagggagctccc 182
>51384_ppt-miR319a:pmrd
Length = 169
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 145 ctcttggactgaagggagctcc 166
||||||||||||||||||||||
Sbjct: 146 ctcttggactgaagggagctcc 167
>48687_ltu-miR319:pmrd
Length = 167
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 146 tcttggactgaagggagctccc 167
||||||||||||||||||||||
Sbjct: 146 tcttggactgaagggagctccc 167
>54847_vvi-miR319g:pmrd
Length = 222
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 148 ttggactgaagggagctccca 168
|||||||||||||||||||||
Sbjct: 192 ttggactgaagggagctccca 212
>54846_vvi-miR319f:pmrd
Length = 193
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 147 cttggactgaagggagctccc 167
|||||||||||||||||||||
Sbjct: 161 cttggactgaagggagctccc 181
>54844_vvi-miR319c:pmrd
Length = 182
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 147 cttggactgaagggagctccc 167
|||||||||||||||||||||
Sbjct: 150 cttggactgaagggagctccc 170
>54686_tae-miR319a:pmrd
Length = 196
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 147 cttggactgaagggagctccc 167
|||||||||||||||||||||
Sbjct: 176 cttggactgaagggagctccc 196
>54583_smo-miR319:pmrd
Length = 215
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 147 cttggactgaagggagctccc 167
|||||||||||||||||||||
Sbjct: 185 cttggactgaagggagctccc 205
>51710_ptc-miR319d:pmrd
Length = 193
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 147 cttggactgaagggagctccc 167
|||||||||||||||||||||
Sbjct: 164 cttggactgaagggagctccc 184
>51709_ptc-miR319c:pmrd
Length = 196
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 147 cttggactgaagggagctccc 167
|||||||||||||||||||||
Sbjct: 167 cttggactgaagggagctccc 187
>51707_ptc-miR319a:pmrd
Length = 188
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 147 cttggactgaagggagctccc 167
|||||||||||||||||||||
Sbjct: 159 cttggactgaagggagctccc 179
>48573_gma-miR319b:pmrd
Length = 208
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 147 cttggactgaagggagctccc 167
|||||||||||||||||||||
Sbjct: 169 cttggactgaagggagctccc 189
>48572_gma-miR319a:pmrd
Length = 207
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 147 cttggactgaagggagctccc 167
|||||||||||||||||||||
Sbjct: 168 cttggactgaagggagctccc 188
>46993_ath-miR319b:pmrd
Length = 172
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 147 cttggactgaagggagctccc 167
|||||||||||||||||||||
Sbjct: 151 cttggactgaagggagctccc 171
>46884_aqc-miR319:pmrd
Length = 177
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 147 cttggactgaagggagctccc 167
|||||||||||||||||||||
Sbjct: 154 cttggactgaagggagctccc 174
>54754_tar-miR159:pmrd
Length = 192
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 148 ttggactgaagggagctccc 167
||||||||||||||||||||
Sbjct: 161 ttggactgaagggagctccc 180
>54670_svi-miR159:pmrd
Length = 191
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 148 ttggactgaagggagctccc 167
||||||||||||||||||||
Sbjct: 161 ttggactgaagggagctccc 180
>54391_rin-miR159:pmrd
Length = 192
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 148 ttggactgaagggagctccc 167
||||||||||||||||||||
Sbjct: 161 ttggactgaagggagctccc 180
>54380_pvu-miR319c:pmrd
Length = 734
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 147 cttggactgaagggagctcc 166
||||||||||||||||||||
Sbjct: 409 cttggactgaagggagctcc 428
>51713_ptc-miR319g:pmrd
Length = 204
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 147 cttggactgaagggagctcc 166
||||||||||||||||||||
Sbjct: 175 cttggactgaagggagctcc 194
>51712_ptc-miR319f:pmrd
Length = 202
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 147 cttggactgaagggagctcc 166
||||||||||||||||||||
Sbjct: 173 cttggactgaagggagctcc 192
>51708_ptc-miR319b:pmrd
Length = 185
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 148 ttggactgaagggagctccc 167
||||||||||||||||||||
Sbjct: 157 ttggactgaagggagctccc 176
>51351_ppl-miR319:pmrd
Length = 204
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 147 cttggactgaagggagctcc 166
||||||||||||||||||||
Sbjct: 173 cttggactgaagggagctcc 192
>48788_nof-miR159:pmrd
Length = 192
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 148 ttggactgaagggagctccc 167
||||||||||||||||||||
Sbjct: 161 ttggactgaagggagctccc 180
>48694_mma-miR159:pmrd
Length = 192
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 148 ttggactgaagggagctccc 167
||||||||||||||||||||
Sbjct: 161 ttggactgaagggagctccc 180
>48479_fal-miR159:pmrd
Length = 192
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 148 ttggactgaagggagctccc 167
||||||||||||||||||||
Sbjct: 161 ttggactgaagggagctccc 180
>48478_ech-miR159:pmrd
Length = 192
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 148 ttggactgaagggagctccc 167
||||||||||||||||||||
Sbjct: 161 ttggactgaagggagctccc 180
>48476_dso-miR159:pmrd
Length = 192
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 148 ttggactgaagggagctccc 167
||||||||||||||||||||
Sbjct: 161 ttggactgaagggagctccc 180
>48429_crb-miR159:pmrd
Length = 194
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 148 ttggactgaagggagctccc 167
||||||||||||||||||||
Sbjct: 163 ttggactgaagggagctccc 182
>48422_cor-miR159:pmrd
Length = 193
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 148 ttggactgaagggagctccc 167
||||||||||||||||||||
Sbjct: 162 ttggactgaagggagctccc 181
>48421_cmi-miR159:pmrd
Length = 193
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 148 ttggactgaagggagctccc 167
||||||||||||||||||||
Sbjct: 162 ttggactgaagggagctccc 181
>48415_bvl-miR159:pmrd
Length = 192
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 148 ttggactgaagggagctccc 167
||||||||||||||||||||
Sbjct: 161 ttggactgaagggagctccc 180
>47656_ath-miRf10556-akr:pmrd
Length = 203
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 148 ttggactgaagggagctccc 167
||||||||||||||||||||
Sbjct: 37 ttggactgaagggagctccc 18
>46992_ath-miR319a:pmrd
Length = 176
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 148 ttggactgaagggagctccc 167
||||||||||||||||||||
Sbjct: 154 ttggactgaagggagctccc 173
>46860_ape-miR159:pmrd
Length = 192
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 148 ttggactgaagggagctccc 167
||||||||||||||||||||
Sbjct: 161 ttggactgaagggagctccc 180
>46856_ahi-miR159:pmrd
Length = 192
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 148 ttggactgaagggagctccc 167
||||||||||||||||||||
Sbjct: 161 ttggactgaagggagctccc 180
>46855_aha-miR159:pmrd
Length = 192
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 148 ttggactgaagggagctccc 167
||||||||||||||||||||
Sbjct: 161 ttggactgaagggagctccc 180
>46846_acb-miR159:pmrd
Length = 191
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 148 ttggactgaagggagctccc 167
||||||||||||||||||||
Sbjct: 160 ttggactgaagggagctccc 179
