miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>51392_ppt-miR390b:pmrd
Length = 175
Score = 347 bits (175), Expect = 2e-96
Identities = 175/175 (100%)
Strand = Plus / Plus
Query: 1 atcaagctgctgggagatacaattacgaagctcaggagggatagcgcccagccctgcttt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 atcaagctgctgggagatacaattacgaagctcaggagggatagcgcccagccctgcttt 60
Query: 61 tactgttcaatcagttagagtgcttctgatagtaagatgcagatgcatgacgctatccat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tactgttcaatcagttagagtgcttctgatagtaagatgcagatgcatgacgctatccat 120
Query: 121 tctgagctttgcaactgtgtccccctaatttgggcaaccggatcggttagctggt 175
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 tctgagctttgcaactgtgtccccctaatttgggcaaccggatcggttagctggt 175
>51391_ppt-miR390a:pmrd
Length = 137
Score = 65.9 bits (33), Expect = 9e-12
Identities = 33/33 (100%)
Strand = Plus / Plus
Query: 16 gatacaattacgaagctcaggagggatagcgcc 48
|||||||||||||||||||||||||||||||||
Sbjct: 4 gatacaattacgaagctcaggagggatagcgcc 36
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 114 tatccattctgagctttgcaa 134
|||||||||||||||||||||
Sbjct: 105 tatccattctgagctttgcaa 125
>53138_ptc-miRf11316-akr:pmrd
Length = 94
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 28 aagctcaggagggatagcgccc 49
||||||||||||||||||||||
Sbjct: 4 aagctcaggagggatagcgccc 25
>51719_ptc-miR390d:pmrd
Length = 106
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 28 aagctcaggagggatagcgccc 49
||||||||||||||||||||||
Sbjct: 11 aagctcaggagggatagcgccc 32
>51717_ptc-miR390b:pmrd
Length = 106
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 28 aagctcaggagggatagcgccc 49
||||||||||||||||||||||
Sbjct: 11 aagctcaggagggatagcgccc 32
>51394_ppt-miR390c:pmrd
Length = 135
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 29 agctcaggagggatagcgccca 50
||||||||||||||||||||||
Sbjct: 14 agctcaggagggatagcgccca 35
>51393_ppt-miR390c:pmrd
Length = 135
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 29 agctcaggagggatagcgccca 50
||||||||||||||||||||||
Sbjct: 14 agctcaggagggatagcgccca 35
>48916_osa-miR390:pmrd
Length = 91
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 27 gaagctcaggagggatagcgcc 48
||||||||||||||||||||||
Sbjct: 18 gaagctcaggagggatagcgcc 39
>55055_zma-miR390:pmrd
Length = 177
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 28 aagctcaggagggatagcgcc 48
|||||||||||||||||||||
Sbjct: 1 aagctcaggagggatagcgcc 21
>54848_vvi-miR390:pmrd
Length = 140
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 28 aagctcaggagggatagcgcc 48
|||||||||||||||||||||
Sbjct: 11 aagctcaggagggatagcgcc 31
>52711_ptc-miRf10889-akr:pmrd
Length = 127
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 28 aagctcaggagggatagcgcc 48
|||||||||||||||||||||
Sbjct: 14 aagctcaggagggatagcgcc 34
>51718_ptc-miR390c:pmrd
Length = 123
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 28 aagctcaggagggatagcgcc 48
|||||||||||||||||||||
Sbjct: 11 aagctcaggagggatagcgcc 31
>51716_ptc-miR390a:pmrd
Length = 119
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 28 aagctcaggagggatagcgcc 48
|||||||||||||||||||||
Sbjct: 11 aagctcaggagggatagcgcc 31
>48729_mtr-miR390:pmrd
Length = 90
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 28 aagctcaggagggatagcgcc 48
|||||||||||||||||||||
Sbjct: 1 aagctcaggagggatagcgcc 21
>48500_ghr-miR390c:pmrd
Length = 114
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 28 aagctcaggagggatagcgcc 48
|||||||||||||||||||||
Sbjct: 11 aagctcaggagggatagcgcc 31
>48499_ghr-miR390b:pmrd
Length = 132
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 28 aagctcaggagggatagcgcc 48
|||||||||||||||||||||
Sbjct: 18 aagctcaggagggatagcgcc 38
>48498_ghr-miR390a:pmrd
Length = 124
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 28 aagctcaggagggatagcgcc 48
|||||||||||||||||||||
Sbjct: 15 aagctcaggagggatagcgcc 35
>48372_bna-miR390c:pmrd
Length = 128
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 28 aagctcaggagggatagcgcc 48
|||||||||||||||||||||
Sbjct: 23 aagctcaggagggatagcgcc 43
>48371_bna-miR390b:pmrd
Length = 105
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 28 aagctcaggagggatagcgcc 48
|||||||||||||||||||||
Sbjct: 18 aagctcaggagggatagcgcc 38
>48370_bna-miR390a:pmrd
Length = 144
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 28 aagctcaggagggatagcgcc 48
|||||||||||||||||||||
Sbjct: 33 aagctcaggagggatagcgcc 53
>47212_ath-miRf10112-akr:pmrd
Length = 107
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 28 aagctcaggagggatagcgcc 48
|||||||||||||||||||||
Sbjct: 18 aagctcaggagggatagcgcc 38
>47211_ath-miRf10111-akr:pmrd
Length = 71
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 28 aagctcaggagggatagcgcc 48
|||||||||||||||||||||
Sbjct: 1 aagctcaggagggatagcgcc 21
>46996_ath-miR390b:pmrd
Length = 120
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 28 aagctcaggagggatagcgcc 48
|||||||||||||||||||||
Sbjct: 15 aagctcaggagggatagcgcc 35
>46995_ath-miR390a:pmrd
Length = 107
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 28 aagctcaggagggatagcgcc 48
|||||||||||||||||||||
Sbjct: 18 aagctcaggagggatagcgcc 38
