miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>51406_ppt-miR529a:pmrd
Length = 149
Score = 295 bits (149), Expect = 5e-81
Identities = 149/149 (100%)
Strand = Plus / Plus
Query: 1 ctccccttttctacattcaagccgggtttcgaagagagagagcacagccctggacttttc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ctccccttttctacattcaagccgggtttcgaagagagagagcacagccctggacttttc 60
Query: 61 tcatgtgaccgattttagcggtacatggtgcactgtcatcgggctgttctctctctcttc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tcatgtgaccgattttagcggtacatggtgcactgtcatcgggctgttctctctctcttc 120
Query: 121 tagaccctacttggatgtgtttctactgc 149
|||||||||||||||||||||||||||||
Sbjct: 121 tagaccctacttggatgtgtttctactgc 149
>51412_ppt-miR529g:pmrd
Length = 149
Score = 67.9 bits (34), Expect = 2e-12
Identities = 49/54 (90%)
Strand = Plus / Plus
Query: 7 ttttctacattcaagccgggtttcgaagagagagagcacagccctggacttttc 60
|||||||||||||||| ||| |||||||||||||||||||| || ||||||||
Sbjct: 7 ttttctacattcaagctggggttcgaagagagagagcacagtcccagacttttc 60
>51408_ppt-miR529c:pmrd
Length = 151
Score = 58.0 bits (29), Expect = 2e-09
Identities = 41/45 (91%)
Strand = Plus / Plus
Query: 6 cttttctacattcaagccgggtttcgaagagagagagcacagccc 50
|||| |||||| |||||| || |||||||||||||||||||||||
Sbjct: 6 ctttactacatccaagccaggattcgaagagagagagcacagccc 50
>51407_ppt-miR529b:pmrd
Length = 149
Score = 58.0 bits (29), Expect = 2e-09
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 18 caagccgggtttcgaagagagagagcacagccc 50
||||||||| |||||||||||||||||||||||
Sbjct: 18 caagccgggattcgaagagagagagcacagccc 50
>51409_ppt-miR529d:pmrd
Length = 136
Score = 42.1 bits (21), Expect = 1e-04
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 97 catcgggctgttctctctctcttct 121
||||||||||| |||||||||||||
Sbjct: 61 catcgggctgtgctctctctcttct 37
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 31 gaagagagagagcacagccc 50
||||||||||||||||||||
Sbjct: 38 gaagagagagagcacagccc 57
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 31 gaagagagagagcacagccc 50
||||||||||||||||||||
Sbjct: 100 gaagagagagagcacagccc 81
>54531_sin-miR157:pmrd
Length = 83
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 31 gaagagagagagcacagccc 50
||||||||||||||||||||
Sbjct: 7 gaagagagagagcacagccc 26
>54530_sin-miR156:pmrd
Length = 81
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 31 gaagagagagagcacagccc 50
||||||||||||||||||||
Sbjct: 6 gaagagagagagcacagccc 25
>51411_ppt-miR529f:pmrd
Length = 122
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 31 gaagagagagagcacagccc 50
||||||||||||||||||||
Sbjct: 93 gaagagagagagcacagccc 74
>51410_ppt-miR529e:pmrd
Length = 122
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 31 gaagagagagagcacagccc 50
||||||||||||||||||||
Sbjct: 93 gaagagagagagcacagccc 74
