miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>51407_ppt-miR529b:pmrd
Length = 149
Score = 295 bits (149), Expect = 5e-81
Identities = 149/149 (100%)
Strand = Plus / Plus
Query: 1 ttcagccgtactacacccaagccgggattcgaagagagagagcacagcccgtaactttca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ttcagccgtactacacccaagccgggattcgaagagagagagcacagcccgtaactttca 60
Query: 61 ctaaagaccacttattgtggttcattggagatttgatgtcgggctgtgctctctcttttc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ctaaagaccacttattgtggttcattggagatttgatgtcgggctgtgctctctcttttc 120
Query: 121 cagtccctactcggatgtgtcgccatcac 149
|||||||||||||||||||||||||||||
Sbjct: 121 cagtccctactcggatgtgtcgccatcac 149
>51408_ppt-miR529c:pmrd
Length = 151
Score = 105 bits (53), Expect = 9e-24
Identities = 115/133 (86%), Gaps = 2/133 (1%)
Strand = Plus / Plus
Query: 9 tactacacccaagccgggattcgaagagagagagcacagccc-gtaactttcact-aaag 66
||||||| ||||||| |||||||||||||||||||||||||| || ||||| || ||||
Sbjct: 9 tactacatccaagccaggattcgaagagagagagcacagccccgttacttttgctgaaag 68
Query: 67 accacttattgtggttcattggagatttgatgtcgggctgtgctctctcttttccagtcc 126
| |||| |||| | |||||| ||||||||| ||||||||||||||||||||||||||
Sbjct: 69 aatacttcctgtgatccattgggaatttgatgttgggctgtgctctctcttttccagtcc 128
Query: 127 ctactcggatgtg 139
|||| |||||||
Sbjct: 129 ctacctggatgtg 141
>51412_ppt-miR529g:pmrd
Length = 149
Score = 69.9 bits (35), Expect = 5e-13
Identities = 41/43 (95%)
Strand = Plus / Plus
Query: 98 gtcgggctgtgctctctcttttccagtccctactcggatgtgt 140
|||||||||| ||||||||||||||||||||||||| ||||||
Sbjct: 98 gtcgggctgtactctctcttttccagtccctactcgaatgtgt 140
Score = 44.1 bits (22), Expect = 3e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 18 caagccgggattcgaagagagagagcacag 47
||||| ||| ||||||||||||||||||||
Sbjct: 18 caagctggggttcgaagagagagagcacag 47
>51406_ppt-miR529a:pmrd
Length = 149
Score = 58.0 bits (29), Expect = 2e-09
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 18 caagccgggattcgaagagagagagcacagccc 50
||||||||| |||||||||||||||||||||||
Sbjct: 18 caagccgggtttcgaagagagagagcacagccc 50
>51411_ppt-miR529f:pmrd
Length = 122
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 31 gaagagagagagcacagcccgt 52
||||||||||||||||||||||
Sbjct: 93 gaagagagagagcacagcccgt 72
>54531_sin-miR157:pmrd
Length = 83
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 31 gaagagagagagcacagcccg 51
|||||||||||||||||||||
Sbjct: 7 gaagagagagagcacagcccg 27
>54530_sin-miR156:pmrd
Length = 81
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 31 gaagagagagagcacagcccg 51
|||||||||||||||||||||
Sbjct: 6 gaagagagagagcacagcccg 26
>51409_ppt-miR529d:pmrd
Length = 136
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 31 gaagagagagagcacagcccg 51
|||||||||||||||||||||
Sbjct: 38 gaagagagagagcacagcccg 58
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 31 gaagagagagagcacagccc 50
||||||||||||||||||||
Sbjct: 100 gaagagagagagcacagccc 81
>51410_ppt-miR529e:pmrd
Length = 122
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 31 gaagagagagagcacagccc 50
||||||||||||||||||||
Sbjct: 93 gaagagagagagcacagccc 74
