miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>51408_ppt-miR529c:pmrd
Length = 151
Score = 299 bits (151), Expect = 3e-82
Identities = 151/151 (100%)
Strand = Plus / Plus
Query: 1 ttcagctttactacatccaagccaggattcgaagagagagagcacagccccgttactttt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ttcagctttactacatccaagccaggattcgaagagagagagcacagccccgttactttt 60
Query: 61 gctgaaagaatacttcctgtgatccattgggaatttgatgttgggctgtgctctctcttt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 gctgaaagaatacttcctgtgatccattgggaatttgatgttgggctgtgctctctcttt 120
Query: 121 tccagtccctacctggatgtgctgccattgc 151
|||||||||||||||||||||||||||||||
Sbjct: 121 tccagtccctacctggatgtgctgccattgc 151
>51407_ppt-miR529b:pmrd
Length = 149
Score = 105 bits (53), Expect = 9e-24
Identities = 115/133 (86%), Gaps = 2/133 (1%)
Strand = Plus / Plus
Query: 9 tactacatccaagccaggattcgaagagagagagcacagccccgttacttttgctgaaag 68
||||||| ||||||| |||||||||||||||||||||||||| || ||||| || ||||
Sbjct: 9 tactacacccaagccgggattcgaagagagagagcacagccc-gtaactttcact-aaag 66
Query: 69 aatacttcctgtgatccattgggaatttgatgttgggctgtgctctctcttttccagtcc 128
| |||| |||| | |||||| ||||||||| ||||||||||||||||||||||||||
Sbjct: 67 accacttattgtggttcattggagatttgatgtcgggctgtgctctctcttttccagtcc 126
Query: 129 ctacctggatgtg 141
|||| |||||||
Sbjct: 127 ctactcggatgtg 139
>51406_ppt-miR529a:pmrd
Length = 149
Score = 58.0 bits (29), Expect = 2e-09
Identities = 41/45 (91%)
Strand = Plus / Plus
Query: 6 ctttactacatccaagccaggattcgaagagagagagcacagccc 50
|||| |||||| |||||| || |||||||||||||||||||||||
Sbjct: 6 cttttctacattcaagccgggtttcgaagagagagagcacagccc 50
>51412_ppt-miR529g:pmrd
Length = 149
Score = 52.0 bits (26), Expect = 1e-07
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 103 gggctgtgctctctcttttccagtccctac 132
||||||| ||||||||||||||||||||||
Sbjct: 101 gggctgtactctctcttttccagtccctac 130
Score = 42.1 bits (21), Expect = 1e-04
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 11 ctacatccaagccaggattcgaagagagagagcacag 47
|||||| ||||| || ||||||||||||||||||||
Sbjct: 11 ctacattcaagctggggttcgaagagagagagcacag 47
>54531_sin-miR157:pmrd
Length = 83
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 31 gaagagagagagcacagccc 50
||||||||||||||||||||
Sbjct: 7 gaagagagagagcacagccc 26
>54530_sin-miR156:pmrd
Length = 81
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 31 gaagagagagagcacagccc 50
||||||||||||||||||||
Sbjct: 6 gaagagagagagcacagccc 25
>51411_ppt-miR529f:pmrd
Length = 122
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 31 gaagagagagagcacagccc 50
||||||||||||||||||||
Sbjct: 93 gaagagagagagcacagccc 74
>51410_ppt-miR529e:pmrd
Length = 122
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 31 gaagagagagagcacagccc 50
||||||||||||||||||||
Sbjct: 93 gaagagagagagcacagccc 74
>51409_ppt-miR529d:pmrd
Length = 136
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 31 gaagagagagagcacagccc 50
||||||||||||||||||||
Sbjct: 38 gaagagagagagcacagccc 57
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 31 gaagagagagagcacagccc 50
||||||||||||||||||||
Sbjct: 100 gaagagagagagcacagccc 81
