miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>51409_ppt-miR529d:pmrd
Length = 136
Score = 270 bits (136), Expect = 2e-73
Identities = 136/136 (100%)
Strand = Plus / Plus
Query: 1 ctagcttctccacaatttctcaccctcgttgggatcagaagagagagagcacagcccgat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ctagcttctccacaatttctcaccctcgttgggatcagaagagagagagcacagcccgat 60
Query: 61 gtccaatgttcaggtcgaatgggctgtgctctctctcttcttgctccaacttgggtgcta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 gtccaatgttcaggtcgaatgggctgtgctctctctcttcttgctccaacttgggtgcta 120
Query: 121 cacgcatctagggtac 136
||||||||||||||||
Sbjct: 121 cacgcatctagggtac 136
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 81 gggctgtgctctctctcttct 101
|||||||||||||||||||||
Sbjct: 57 gggctgtgctctctctcttct 37
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 37 agaagagagagagcacagccc 57
|||||||||||||||||||||
Sbjct: 101 agaagagagagagcacagccc 81
>51411_ppt-miR529f:pmrd
Length = 122
Score = 97.6 bits (49), Expect = 2e-21
Identities = 79/89 (88%)
Strand = Plus / Plus
Query: 30 tgggatcagaagagagagagcacagcccgatgtccaatgttcaggtcgaatgggctgtgc 89
|||||||||||||||||||| ||||||| | | || |||||||| | ||| |||||||||
Sbjct: 23 tgggatcagaagagagagagtacagcccaacggccgatgttcagttggaacgggctgtgc 82
Query: 90 tctctctcttcttgctccaacttgggtgc 118
|||||||||||||| |||||| |||||||
Sbjct: 83 tctctctcttcttgttccaacctgggtgc 111
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 37 agaagagagagagcacagcccg 58
||||||||||||||||||||||
Sbjct: 94 agaagagagagagcacagcccg 73
>51410_ppt-miR529e:pmrd
Length = 122
Score = 52.0 bits (26), Expect = 1e-07
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 77 gaatgggctgtgctctctctcttcttgctccaac 110
||||||||||||||||||||||||| | ||||||
Sbjct: 70 gaatgggctgtgctctctctcttctggttccaac 103
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 36 cagaagagagagagcacagccc 57
||||||||||||||||||||||
Sbjct: 95 cagaagagagagagcacagccc 74
>54531_sin-miR157:pmrd
Length = 83
Score = 46.1 bits (23), Expect = 7e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 36 cagaagagagagagcacagcccg 58
|||||||||||||||||||||||
Sbjct: 5 cagaagagagagagcacagcccg 27
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 81 gggctgtgctctctctcttct 101
|||||||||||||||||||||
Sbjct: 26 gggctgtgctctctctcttct 6
>54530_sin-miR156:pmrd
Length = 81
Score = 46.1 bits (23), Expect = 7e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 36 cagaagagagagagcacagcccg 58
|||||||||||||||||||||||
Sbjct: 4 cagaagagagagagcacagcccg 26
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 81 gggctgtgctctctctcttct 101
|||||||||||||||||||||
Sbjct: 25 gggctgtgctctctctcttct 5
>51407_ppt-miR529b:pmrd
Length = 149
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 38 gaagagagagagcacagcccg 58
|||||||||||||||||||||
Sbjct: 31 gaagagagagagcacagcccg 51
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 81 gggctgtgctctctctcttc 100
||||||||||||||||||||
Sbjct: 50 gggctgtgctctctctcttc 31
>51406_ppt-miR529a:pmrd
Length = 149
Score = 42.1 bits (21), Expect = 1e-04
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 37 agaagagagagagcacagcccgatg 61
||||||||||||| |||||||||||
Sbjct: 121 agaagagagagagaacagcccgatg 97
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 81 gggctgtgctctctctcttc 100
||||||||||||||||||||
Sbjct: 50 gggctgtgctctctctcttc 31
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 38 gaagagagagagcacagccc 57
||||||||||||||||||||
Sbjct: 31 gaagagagagagcacagccc 50
>54621_sof-miR156c:pmrd
Length = 68
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 36 cagaagagagagagcacagc 55
||||||||||||||||||||
Sbjct: 4 cagaagagagagagcacagc 23
>51408_ppt-miR529c:pmrd
Length = 151
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 81 gggctgtgctctctctcttc 100
||||||||||||||||||||
Sbjct: 50 gggctgtgctctctctcttc 31
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 38 gaagagagagagcacagccc 57
||||||||||||||||||||
Sbjct: 31 gaagagagagagcacagccc 50
>48689_mdo-miR156b:pmrd
Length = 79
Score = 40.1 bits (20), Expect = 4e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 36 cagaagagagagagcacagcccga 59
||||||||||||||||||| ||||
Sbjct: 4 cagaagagagagagcacagtccga 27
>48655_hvv-miR156d:pmrd
Length = 203
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 36 cagaagagagagagcacagc 55
||||||||||||||||||||
Sbjct: 4 cagaagagagagagcacagc 23
>48533_gma-miR156f:pmrd
Length = 267
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 36 cagaagagagagagcacagc 55
||||||||||||||||||||
Sbjct: 4 cagaagagagagagcacagc 23
>48305_bdi-miR156:pmrd
Length = 147
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 36 cagaagagagagagcacagc 55
||||||||||||||||||||
Sbjct: 104 cagaagagagagagcacagc 123
>46857_ahy-miR157k:pmrd
Length = 139
Score = 40.1 bits (20), Expect = 4e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 36 cagaagagagagagcacagcccga 59
|||||||||||||||||| |||||
Sbjct: 25 cagaagagagagagcacaacccga 48
