miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>51410_ppt-miR529e:pmrd
Length = 122
Score = 242 bits (122), Expect = 5e-65
Identities = 122/122 (100%)
Strand = Plus / Plus
Query: 1 tcagcaatttactcactcatgctgggatcagaagagagagagtacagcccaagagcaacc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tcagcaatttactcactcatgctgggatcagaagagagagagtacagcccaagagcaacc 60
Query: 61 gcttagttggaatgggctgtgctctctctcttctggttccaacctgagtgcatgtcggtt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 gcttagttggaatgggctgtgctctctctcttctggttccaacctgagtgcatgtcggtt 120
Query: 121 gt 122
||
Sbjct: 121 gt 122
>51411_ppt-miR529f:pmrd
Length = 122
Score = 121 bits (61), Expect = 1e-28
Identities = 97/109 (88%)
Strand = Plus / Plus
Query: 5 caatttactcactcatgctgggatcagaagagagagagtacagcccaagagcaaccgctt 64
|||||| ||||||||||||||||||||||||||||||||||||||||| || | |
Sbjct: 5 caattttctcactcatgctgggatcagaagagagagagtacagcccaacggccgatgttc 64
Query: 65 agttggaatgggctgtgctctctctcttctggttccaacctgagtgcat 113
|||||||| ||||||||||||||||||||| ||||||||||| ||||||
Sbjct: 65 agttggaacgggctgtgctctctctcttcttgttccaacctgggtgcat 113
>51409_ppt-miR529d:pmrd
Length = 136
Score = 52.0 bits (26), Expect = 1e-07
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 70 gaatgggctgtgctctctctcttctggttccaac 103
||||||||||||||||||||||||| | ||||||
Sbjct: 77 gaatgggctgtgctctctctcttcttgctccaac 110
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 74 gggctgtgctctctctcttctg 95
||||||||||||||||||||||
Sbjct: 57 gggctgtgctctctctcttctg 36
>54531_sin-miR157:pmrd
Length = 83
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 74 gggctgtgctctctctcttctg 95
||||||||||||||||||||||
Sbjct: 26 gggctgtgctctctctcttctg 5
>54530_sin-miR156:pmrd
Length = 81
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 74 gggctgtgctctctctcttctg 95
||||||||||||||||||||||
Sbjct: 25 gggctgtgctctctctcttctg 4
>54621_sof-miR156c:pmrd
Length = 68
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 76 gctgtgctctctctcttctg 95
||||||||||||||||||||
Sbjct: 23 gctgtgctctctctcttctg 4
>51408_ppt-miR529c:pmrd
Length = 151
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 74 gggctgtgctctctctcttc 93
||||||||||||||||||||
Sbjct: 50 gggctgtgctctctctcttc 31
>51407_ppt-miR529b:pmrd
Length = 149
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 74 gggctgtgctctctctcttc 93
||||||||||||||||||||
Sbjct: 50 gggctgtgctctctctcttc 31
>51406_ppt-miR529a:pmrd
Length = 149
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 74 gggctgtgctctctctcttc 93
||||||||||||||||||||
Sbjct: 50 gggctgtgctctctctcttc 31
>49019_osa-miR529a:pmrd
Length = 99
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 30 agaagagagagagtacagcc 49
||||||||||||||||||||
Sbjct: 3 agaagagagagagtacagcc 22
>48655_hvv-miR156d:pmrd
Length = 203
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 76 gctgtgctctctctcttctg 95
||||||||||||||||||||
Sbjct: 23 gctgtgctctctctcttctg 4
>48533_gma-miR156f:pmrd
Length = 267
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 76 gctgtgctctctctcttctg 95
||||||||||||||||||||
Sbjct: 23 gctgtgctctctctcttctg 4
>48305_bdi-miR156:pmrd
Length = 147
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 76 gctgtgctctctctcttctg 95
||||||||||||||||||||
Sbjct: 123 gctgtgctctctctcttctg 104
>46903_aqc-miR529:pmrd
Length = 125
Score = 40.1 bits (20), Expect = 4e-04
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 72 atgggctgtgctctctctcttctg 95
||||| ||||||||||||||||||
Sbjct: 44 atgggttgtgctctctctcttctg 21
