miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>51411_ppt-miR529f:pmrd
Length = 122
Score = 242 bits (122), Expect = 5e-65
Identities = 122/122 (100%)
Strand = Plus / Plus
Query: 1 tgcacaattttctcactcatgctgggatcagaagagagagagtacagcccaacggccgat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tgcacaattttctcactcatgctgggatcagaagagagagagtacagcccaacggccgat 60
Query: 61 gttcagttggaacgggctgtgctctctctcttcttgttccaacctgggtgcatttccgtt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 gttcagttggaacgggctgtgctctctctcttcttgttccaacctgggtgcatttccgtt 120
Query: 121 ct 122
||
Sbjct: 121 ct 122
>51410_ppt-miR529e:pmrd
Length = 122
Score = 121 bits (61), Expect = 1e-28
Identities = 97/109 (88%)
Strand = Plus / Plus
Query: 5 caattttctcactcatgctgggatcagaagagagagagtacagcccaacggccgatgttc 64
|||||| ||||||||||||||||||||||||||||||||||||||||| || | |
Sbjct: 5 caatttactcactcatgctgggatcagaagagagagagtacagcccaagagcaaccgctt 64
Query: 65 agttggaacgggctgtgctctctctcttcttgttccaacctgggtgcat 113
|||||||| ||||||||||||||||||||| ||||||||||| ||||||
Sbjct: 65 agttggaatgggctgtgctctctctcttctggttccaacctgagtgcat 113
>51409_ppt-miR529d:pmrd
Length = 136
Score = 97.6 bits (49), Expect = 2e-21
Identities = 79/89 (88%)
Strand = Plus / Plus
Query: 23 tgggatcagaagagagagagtacagcccaacggccgatgttcagttggaacgggctgtgc 82
|||||||||||||||||||| ||||||| | | || |||||||| | ||| |||||||||
Sbjct: 30 tgggatcagaagagagagagcacagcccgatgtccaatgttcaggtcgaatgggctgtgc 89
Query: 83 tctctctcttcttgttccaacctgggtgc 111
|||||||||||||| |||||| |||||||
Sbjct: 90 tctctctcttcttgctccaacttgggtgc 118
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 73 cgggctgtgctctctctcttct 94
||||||||||||||||||||||
Sbjct: 58 cgggctgtgctctctctcttct 37
>54531_sin-miR157:pmrd
Length = 83
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 73 cgggctgtgctctctctcttct 94
||||||||||||||||||||||
Sbjct: 27 cgggctgtgctctctctcttct 6
>54530_sin-miR156:pmrd
Length = 81
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 73 cgggctgtgctctctctcttct 94
||||||||||||||||||||||
Sbjct: 26 cgggctgtgctctctctcttct 5
>51407_ppt-miR529b:pmrd
Length = 149
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 72 acgggctgtgctctctctcttc 93
||||||||||||||||||||||
Sbjct: 52 acgggctgtgctctctctcttc 31
>51408_ppt-miR529c:pmrd
Length = 151
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 74 gggctgtgctctctctcttc 93
||||||||||||||||||||
Sbjct: 50 gggctgtgctctctctcttc 31
>51406_ppt-miR529a:pmrd
Length = 149
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 74 gggctgtgctctctctcttc 93
||||||||||||||||||||
Sbjct: 50 gggctgtgctctctctcttc 31
>49019_osa-miR529a:pmrd
Length = 99
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 30 agaagagagagagtacagcc 49
||||||||||||||||||||
Sbjct: 3 agaagagagagagtacagcc 22
