miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>51432_ppt-miR537c:pmrd
Length = 149
Score = 295 bits (149), Expect = 5e-81
Identities = 149/149 (100%)
Strand = Plus / Plus
Query: 1 tcatatctggactgtagaaacacctgaagtgactgaagttagtccggtttaggtatgaga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tcatatctggactgtagaaacacctgaagtgactgaagttagtccggtttaggtatgaga 60
Query: 61 atgattggagcacctctccagatgttccagatgtaatgaaaccggtgcaagcttcaagct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 atgattggagcacctctccagatgttccagatgtaatgaaaccggtgcaagcttcaagct 120
Query: 121 cttgaggtgtttctacaggctacatatga 149
|||||||||||||||||||||||||||||
Sbjct: 121 cttgaggtgtttctacaggctacatatga 149
>51431_ppt-miR537b:pmrd
Length = 149
Score = 295 bits (149), Expect = 5e-81
Identities = 149/149 (100%)
Strand = Plus / Plus
Query: 1 tcatatctggactgtagaaacacctgaagtgactgaagttagtccggtttaggtatgaga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tcatatctggactgtagaaacacctgaagtgactgaagttagtccggtttaggtatgaga 60
Query: 61 atgattggagcacctctccagatgttccagatgtaatgaaaccggtgcaagcttcaagct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 atgattggagcacctctccagatgttccagatgtaatgaaaccggtgcaagcttcaagct 120
Query: 121 cttgaggtgtttctacaggctacatatga 149
|||||||||||||||||||||||||||||
Sbjct: 121 cttgaggtgtttctacaggctacatatga 149
>51430_ppt-miR537a:pmrd
Length = 190
Score = 69.9 bits (35), Expect = 5e-13
Identities = 38/39 (97%)
Strand = Plus / Plus
Query: 111 gcttcaagctcttgaggtgtttctacaggctacatatga 149
||||||| |||||||||||||||||||||||||||||||
Sbjct: 144 gcttcaaactcttgaggtgtttctacaggctacatatga 182
Score = 50.1 bits (25), Expect = 5e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 1 tcatatctggactgtagaaacacctgaag 29
|||||| ||||||||||||||||||||||
Sbjct: 8 tcatatatggactgtagaaacacctgaag 36
>51433_ppt-miR537d:pmrd
Length = 178
Score = 48.1 bits (24), Expect = 2e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 121 cttgaggtgtttctacaggctacatatg 148
||||||||||||||||||||||| ||||
Sbjct: 135 cttgaggtgtttctacaggctacttatg 162
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 10 gactgtagaaacacctgaag 29
||||||||||||||||||||
Sbjct: 26 gactgtagaaacacctgaag 45
