miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>51433_ppt-miR537d:pmrd
Length = 178
Score = 353 bits (178), Expect = 3e-98
Identities = 178/178 (100%)
Strand = Plus / Plus
Query: 1 ttgaacaatgtcattatcatacatagactgtagaaacacctgaagctattgatctctact 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ttgaacaatgtcattatcatacatagactgtagaaacacctgaagctattgatctctact 60
Query: 61 ttgttgtaaccgatctttatggaaagtgcacgaaaatgtgtatgctgtgatcgcacgatt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ttgttgtaaccgatctttatggaaagtgcacgaaaatgtgtatgctgtgatcgcacgatt 120
Query: 121 ggtgacatcagtaacttgaggtgtttctacaggctacttatgcttgatgattatctta 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 ggtgacatcagtaacttgaggtgtttctacaggctacttatgcttgatgattatctta 178
>51430_ppt-miR537a:pmrd
Length = 190
Score = 52.0 bits (26), Expect = 1e-07
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 135 cttgaggtgtttctacaggctacttatgcttgat 168
||||||||||||||||||||||| |||| |||||
Sbjct: 154 cttgaggtgtttctacaggctacatatgattgat 187
Score = 44.1 bits (22), Expect = 4e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 17 tcatacatagactgtagaaacacctgaagc 46
||||| || |||||||||||||||||||||
Sbjct: 8 tcatatatggactgtagaaacacctgaagc 37
>51432_ppt-miR537c:pmrd
Length = 149
Score = 48.1 bits (24), Expect = 2e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 135 cttgaggtgtttctacaggctacttatg 162
||||||||||||||||||||||| ||||
Sbjct: 121 cttgaggtgtttctacaggctacatatg 148
Score = 40.1 bits (20), Expect = 6e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 26 gactgtagaaacacctgaag 45
||||||||||||||||||||
Sbjct: 10 gactgtagaaacacctgaag 29
>51431_ppt-miR537b:pmrd
Length = 149
Score = 48.1 bits (24), Expect = 2e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 135 cttgaggtgtttctacaggctacttatg 162
||||||||||||||||||||||| ||||
Sbjct: 121 cttgaggtgtttctacaggctacatatg 148
Score = 40.1 bits (20), Expect = 6e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 26 gactgtagaaacacctgaag 45
||||||||||||||||||||
Sbjct: 10 gactgtagaaacacctgaag 29
