miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>51436_ppt-miR538c:pmrd
Length = 160
Score = 317 bits (160), Expect = 1e-87
Identities = 160/160 (100%)
Strand = Plus / Plus
Query: 1 ttacaaagagttcttgagtctccatgcttctctgacgttgcatggagtctatgtctggac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ttacaaagagttcttgagtctccatgcttctctgacgttgcatggagtctatgtctggac 60
Query: 61 cttctccatttcctctttcaagagaatgtgagcattgaaggattcggacatagccttcat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 cttctccatttcctctttcaagagaatgtgagcattgaaggattcggacatagccttcat 120
Query: 121 gcatgctagagtatcatggaggcccgtgaactacttgtaa 160
||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 gcatgctagagtatcatggaggcccgtgaactacttgtaa 160
>51435_ppt-miR538b:pmrd
Length = 118
Score = 159 bits (80), Expect = 8e-40
Identities = 104/112 (92%)
Strand = Plus / Plus
Query: 22 ccatgcttctctgacgttgcatggagtctatgtctggaccttctccatttcctctttcaa 81
|||||||||||| |||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct: 1 ccatgcttctctaacgttgcatggagtctatgtctggacctcctccatttgctctttcaa 60
Query: 82 gagaatgtgagcattgaaggattcggacatagccttcatgcatgctagagta 133
||||||||||| ||| |||||||||||||||||||||||||||||||||
Sbjct: 61 gagaatgtgagaatttcgagattcggacatagccttcatgcatgctagagta 112
>51434_ppt-miR538a:pmrd
Length = 179
Score = 69.9 bits (35), Expect = 6e-13
Identities = 53/59 (89%)
Strand = Plus / Plus
Query: 1 ttacaaagagttcttgagtctccatgcttctctgacgttgcatggagtctatgtctgga 59
|||||| ||||| |||||||||||||| |||| || ||||||||||||||||||||||
Sbjct: 1 ttacaatgagtttgtgagtctccatgctgctctaacattgcatggagtctatgtctgga 59
Score = 44.1 bits (22), Expect = 3e-05
Identities = 43/50 (86%)
Strand = Plus / Plus
Query: 111 tagccttcatgcatgctagagtatcatggaggcccgtgaactacttgtaa 160
||||||||||||||| |||||| |||| ||||||||||||||||||
Sbjct: 130 tagccttcatgcatgttagagtgatgtggaaacccgtgaactacttgtaa 179
