miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>51460_ppt-miR1030c:pmrd
Length = 218
Score = 432 bits (218), Expect = e-122
Identities = 218/218 (100%)
Strand = Plus / Plus
Query: 1 tactccttgctctgctgcatcgtaatgcatctgcatctgcacctgcaccacgttgtgata 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tactccttgctctgctgcatcgtaatgcatctgcatctgcacctgcaccacgttgtgata 60
Query: 61 ggaacaaaactctgtcttgctgattccctgcacacatgcctttgttacccagcattctcg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ggaacaaaactctgtcttgctgattccctgcacacatgcctttgttacccagcattctcg 120
Query: 121 aatacggcgtcggtgctatcctcagataagtagagttgtcctcactaggttggtgaggtg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 aatacggcgtcggtgctatcctcagataagtagagttgtcctcactaggttggtgaggtg 180
Query: 181 catatgcagaggcgttacattgcagctgcttaatattg 218
||||||||||||||||||||||||||||||||||||||
Sbjct: 181 catatgcagaggcgttacattgcagctgcttaatattg 218
>51461_ppt-miR1030d:pmrd
Length = 218
Score = 56.0 bits (28), Expect = 1e-08
Identities = 40/44 (90%)
Strand = Plus / Plus
Query: 9 gctctgctgcatcgtaatgcatctgcatctgcacctgcaccacg 52
||||||||||| |||||| |||||||||||||||||||||||
Sbjct: 9 gctctgctgcaatgtaatgtgtctgcatctgcacctgcaccacg 52
Score = 44.1 bits (22), Expect = 4e-05
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 171 tggtgaggtgcatatgcagaggcgttacattgca 204
||||||| |||| ||||||||| |||||||||||
Sbjct: 171 tggtgagatgcagatgcagaggtgttacattgca 204
>51459_ppt-miR1030b:pmrd
Length = 170
Score = 54.0 bits (27), Expect = 5e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 25 atgcatctgcatctgcacctgcaccac 51
|||||||||||||||||||||||||||
Sbjct: 5 atgcatctgcatctgcacctgcaccac 31
>51464_ppt-miR1030g:pmrd
Length = 208
Score = 44.1 bits (22), Expect = 4e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 29 atctgcatctgcacctgcacca 50
||||||||||||||||||||||
Sbjct: 29 atctgcatctgcacctgcacca 50
>51463_ppt-miR1030f:pmrd
Length = 196
Score = 44.1 bits (22), Expect = 4e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 29 atctgcatctgcacctgcacca 50
||||||||||||||||||||||
Sbjct: 29 atctgcatctgcacctgcacca 50
>51467_ppt-miR1030j:pmrd
Length = 222
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 31 ctgcatctgcacctgcaccac 51
|||||||||||||||||||||
Sbjct: 33 ctgcatctgcacctgcaccac 53
>51465_ppt-miR1030h:pmrd
Length = 171
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 29 atctgcatctgcacctgcacc 49
|||||||||||||||||||||
Sbjct: 13 atctgcatctgcacctgcacc 33
>51462_ppt-miR1030e:pmrd
Length = 208
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 30 tctgcatctgcacctgcacca 50
|||||||||||||||||||||
Sbjct: 30 tctgcatctgcacctgcacca 50
>51458_ppt-miR1030a:pmrd
Length = 215
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 30 tctgcatctgcacctgcacca 50
|||||||||||||||||||||
Sbjct: 33 tctgcatctgcacctgcacca 53
