miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>51462_ppt-miR1030e:pmrd
Length = 208
Score = 412 bits (208), Expect = e-116
Identities = 208/208 (100%)
Strand = Plus / Plus
Query: 1 gaaaatccttgaagctgcaacgctacttttctgcatctgcacctgcaccaagatgcgata 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gaaaatccttgaagctgcaacgctacttttctgcatctgcacctgcaccaagatgcgata 60
Query: 61 acatgtacagatgaaccaaatacacagttgtactgtcatgcccagttagccactggactt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 acatgtacagatgaaccaaatacacagttgtactgtcatgcccagttagccactggactt 120
Query: 121 gatttgttgaacaattatttgtactcgctttatcgcgtactggtgcagtgcctatgcaga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 gatttgttgaacaattatttgtactcgctttatcgcgtactggtgcagtgcctatgcaga 180
Query: 181 catgtagtgttgtagctggatgcagatc 208
||||||||||||||||||||||||||||
Sbjct: 181 catgtagtgttgtagctggatgcagatc 208
>51458_ppt-miR1030a:pmrd
Length = 215
Score = 50.1 bits (25), Expect = 7e-07
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 157 gtactggtgcagtgcctatgcagacatgtagtgttgtagct 197
||||||||||||||| |||||||| |||| | |||||||||
Sbjct: 161 gtactggtgcagtgcttatgcagaaatgttgcgttgtagct 201
Score = 48.1 bits (24), Expect = 3e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 28 tttctgcatctgcacctgcaccaa 51
||||||||||||||||||||||||
Sbjct: 31 tttctgcatctgcacctgcaccaa 54
>51464_ppt-miR1030g:pmrd
Length = 208
Score = 44.1 bits (22), Expect = 4e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 30 tctgcatctgcacctgcaccaa 51
||||||||||||||||||||||
Sbjct: 30 tctgcatctgcacctgcaccaa 51
>51463_ppt-miR1030f:pmrd
Length = 196
Score = 44.1 bits (22), Expect = 4e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 30 tctgcatctgcacctgcaccaa 51
||||||||||||||||||||||
Sbjct: 30 tctgcatctgcacctgcaccaa 51
>51465_ppt-miR1030h:pmrd
Length = 171
Score = 42.1 bits (21), Expect = 2e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 30 tctgcatctgcacctgcaccaagat 54
|||||||||||||||||||| ||||
Sbjct: 14 tctgcatctgcacctgcaccgagat 38
>51461_ppt-miR1030d:pmrd
Length = 218
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 30 tctgcatctgcacctgcacca 50
|||||||||||||||||||||
Sbjct: 30 tctgcatctgcacctgcacca 50
>51460_ppt-miR1030c:pmrd
Length = 218
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 30 tctgcatctgcacctgcacca 50
|||||||||||||||||||||
Sbjct: 30 tctgcatctgcacctgcacca 50
>51459_ppt-miR1030b:pmrd
Length = 170
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 30 tctgcatctgcacctgcacca 50
|||||||||||||||||||||
Sbjct: 10 tctgcatctgcacctgcacca 30
>51467_ppt-miR1030j:pmrd
Length = 222
Score = 40.1 bits (20), Expect = 7e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 31 ctgcatctgcacctgcacca 50
||||||||||||||||||||
Sbjct: 33 ctgcatctgcacctgcacca 52
