miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>51463_ppt-miR1030f:pmrd
Length = 196
Score = 389 bits (196), Expect = e-109
Identities = 196/196 (100%)
Strand = Plus / Plus
Query: 1 cctctacataactactccaatgccacgtatctgcatctgcacctgcaccaaagttttgta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 cctctacataactactccaatgccacgtatctgcatctgcacctgcaccaaagttttgta 60
Query: 61 attctacggctcgtggtagtctgttgttgtgaaggtgggatgtagctgagtgtattactc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 attctacggctcgtggtagtctgttgttgtgaaggtgggatgtagctgagtgtattactc 120
Query: 121 ggtgttcatttgatcattattacccgatggtgcgggttcttatgcagagccgtggcattg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 ggtgttcatttgatcattattacccgatggtgcgggttcttatgcagagccgtggcattg 180
Query: 181 gagtaatcctctactt 196
||||||||||||||||
Sbjct: 181 gagtaatcctctactt 196
>51464_ppt-miR1030g:pmrd
Length = 208
Score = 77.8 bits (39), Expect = 3e-15
Identities = 39/39 (100%)
Strand = Plus / Plus
Query: 18 caatgccacgtatctgcatctgcacctgcaccaaagttt 56
|||||||||||||||||||||||||||||||||||||||
Sbjct: 18 caatgccacgtatctgcatctgcacctgcaccaaagttt 56
Score = 73.8 bits (37), Expect = 4e-14
Identities = 43/45 (95%)
Strand = Plus / Plus
Query: 145 cgatggtgcgggttcttatgcagagccgtggcattggagtaatcc 189
|||||||||||||||||||||||| |||||||||||||| |||||
Sbjct: 157 cgatggtgcgggttcttatgcagaaccgtggcattggagcaatcc 201
>51458_ppt-miR1030a:pmrd
Length = 215
Score = 46.1 bits (23), Expect = 1e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 30 tctgcatctgcacctgcaccaaa 52
|||||||||||||||||||||||
Sbjct: 33 tctgcatctgcacctgcaccaaa 55
>51465_ppt-miR1030h:pmrd
Length = 171
Score = 44.1 bits (22), Expect = 4e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 28 tatctgcatctgcacctgcacc 49
||||||||||||||||||||||
Sbjct: 12 tatctgcatctgcacctgcacc 33
>51462_ppt-miR1030e:pmrd
Length = 208
Score = 44.1 bits (22), Expect = 4e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 30 tctgcatctgcacctgcaccaa 51
||||||||||||||||||||||
Sbjct: 30 tctgcatctgcacctgcaccaa 51
>51460_ppt-miR1030c:pmrd
Length = 218
Score = 44.1 bits (22), Expect = 4e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 29 atctgcatctgcacctgcacca 50
||||||||||||||||||||||
Sbjct: 29 atctgcatctgcacctgcacca 50
>51459_ppt-miR1030b:pmrd
Length = 170
Score = 44.1 bits (22), Expect = 4e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 29 atctgcatctgcacctgcacca 50
||||||||||||||||||||||
Sbjct: 9 atctgcatctgcacctgcacca 30
>51461_ppt-miR1030d:pmrd
Length = 218
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 30 tctgcatctgcacctgcacca 50
|||||||||||||||||||||
Sbjct: 30 tctgcatctgcacctgcacca 50
>51467_ppt-miR1030j:pmrd
Length = 222
Score = 40.1 bits (20), Expect = 6e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 31 ctgcatctgcacctgcacca 50
||||||||||||||||||||
Sbjct: 33 ctgcatctgcacctgcacca 52
