miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>51466_ppt-miR1030i:pmrd
Length = 230
Score = 456 bits (230), Expect = e-129
Identities = 230/230 (100%)
Strand = Plus / Plus
Query: 1 aattctcctcttcatcgctgtaatgccatgttcctgcatctgcacctgcaccgcactgcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 aattctcctcttcatcgctgtaatgccatgttcctgcatctgcacctgcaccgcactgcc 60
Query: 61 tcacgagaatgtgcacgaatggatcagagcggtgttgtgcaaatcctgctttcagtcaat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tcacgagaatgtgcacgaatggatcagagcggtgttgtgcaaatcctgctttcagtcaat 120
Query: 121 cactgagcttgagttttagcaattcttatttcctctgaactttcttctggcattatagtg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 cactgagcttgagttttagcaattcttatttcctctgaactttcttctggcattatagtg 180
Query: 181 gtggaggtgcttatgcagaaatattgcattgcggctgagagccactaatg 230
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 gtggaggtgcttatgcagaaatattgcattgcggctgagagccactaatg 230
>51467_ppt-miR1030j:pmrd
Length = 222
Score = 123 bits (62), Expect = 6e-29
Identities = 175/208 (84%), Gaps = 6/208 (2%)
Strand = Plus / Plus
Query: 5 ctcctcttcatcgctgtaatgccatgttcctgcatctgcacctgcaccgcactgcctcac 64
|||||||||| ||||||||||||||||||||||||||||||||||||| |||| | |
Sbjct: 4 ctcctcttcagcgctgtaatgccatgttcctgcatctgcacctgcaccacacttctacga 63
Query: 65 gagaatgtgcacgaatggatcagagcggtgttgtgcaaatcctgctttcagtcaatcact 124
||||||||||| ||| ||||||||||||||||| ||||||||| ||||||||| ||
Sbjct: 64 gagaatgtgca-gaa---gtcagagcggtgttgtgcgaatcctgctctcagtcaattgct 119
Query: 125 gagcttgagttttagcaattcttatttcctctgaactttcttctggcattatagtggtgg 184
| | ||| |||| ||| |||| ||| ||||| |||| ||||||||| | ||||||
Sbjct: 120 gggattgcgtttctccaa-tcttcttt-ctctgggcttttctctggcattgtggtggtgt 177
Query: 185 aggtgcttatgcagaaatattgcattgc 212
||||||||||||||||||||||| ||||
Sbjct: 178 aggtgcttatgcagaaatattgccttgc 205
>51465_ppt-miR1030h:pmrd
Length = 171
Score = 40.1 bits (20), Expect = 7e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 34 ctgcatctgcacctgcaccg 53
||||||||||||||||||||
Sbjct: 15 ctgcatctgcacctgcaccg 34
