miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>49197_osa-miR2862:pmrd
Length = 221
Score = 97.6 bits (49), Expect = 3e-21
Identities = 64/69 (92%)
Strand = Plus / Plus
Query: 73 agtaaaatttttactcacgagtaaatctgtgagtaaaatttttactcgtgatgacgtgaa 132
|||||||||||||||| ||||||||||| |||||||||||||||||||||||||||| |
Sbjct: 108 agtaaaatttttactcctgagtaaatctgcgagtaaaatttttactcgtgatgacgtgga 167
Query: 133 caaatctca 141
| |||||||
Sbjct: 168 cgaatctca 176
Score = 44.1 bits (22), Expect = 4e-05
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 106 taaaatttttactcgtgatgacgtgaacaaatct 139
|||||||||||||| |||||||||| || |||||
Sbjct: 70 taaaatttttactcatgatgacgtggacgaatct 37
>50082_osa-miRf10867-akr:pmrd
Length = 125
Score = 83.8 bits (42), Expect = 4e-17
Identities = 57/62 (91%)
Strand = Plus / Plus
Query: 69 gcacagtaaaatttttactcacgagtaaatctgtgagtaaaatttttactcgtgatgacg 128
||||||||||||||||||| | ||||||||| ||||||||||||| ||||| ||||||||
Sbjct: 39 gcacagtaaaatttttacttatgagtaaatccgtgagtaaaatttctactcatgatgacg 98
Query: 129 tg 130
||
Sbjct: 99 tg 100
>49045_osa-miR811a:pmrd
Length = 190
Score = 83.8 bits (42), Expect = 4e-17
Identities = 93/110 (84%)
Strand = Plus / Minus
Query: 72 cagtaaaatttttactcacgagtaaatctgtgagtaaaatttttactcgtgatgacgtga 131
||||||||||| ||||| |||| |||||| |||| ||||||| |||| |||||||||||
Sbjct: 110 cagtaaaatttcaactcatgagtgaatctgcgagttaaattttaactcatgatgacgtga 51
Query: 132 acaaatctcaagcgtctattatttaatctaacggtagttttcaagtttcc 181
|| |||||| |||| ||| | |||||||||||||||||||||||||
Sbjct: 50 acgaatctcggacgtccatttctcgatctaacggtagttttcaagtttcc 1
Score = 46.1 bits (23), Expect = 9e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 17 aaactaccgttagatcgagaaat 39
|||||||||||||||||||||||
Sbjct: 11 aaactaccgttagatcgagaaat 33
>50412_osa-miRf11197-akr:pmrd
Length = 130
Score = 67.9 bits (34), Expect = 3e-12
Identities = 52/58 (89%)
Strand = Plus / Minus
Query: 94 taaatctgtgagtaaaatttttactcgtgatgacgtgaacaaatctcaagcgtctatt 151
||||||| ||||||||||||||||||||||||||||| | |||||| | ||||||||
Sbjct: 65 taaatctatgagtaaaatttttactcgtgatgacgtggtcgaatctcgaacgtctatt 8
>49046_osa-miR811b:pmrd
Length = 190
Score = 67.9 bits (34), Expect = 3e-12
Identities = 91/110 (82%)
Strand = Plus / Minus
Query: 72 cagtaaaatttttactcacgagtaaatctgtgagtaaaatttttactcgtgatgacgtga 131
|||||||| ||| ||||| |||| |||||| |||| ||||||| |||| || |||||||
Sbjct: 110 cagtaaaagtttaactcaggagtgaatctgcgagttaaattttaactcatggtgacgtgg 51
Query: 132 acaaatctcaagcgtctattatttaatctaacggtagttttcaagtttcc 181
|| |||||| |||| ||| | |||||||||||||||||||||||||
Sbjct: 50 acgaatctcggacgtccatttctcgatctaacggtagttttcaagtttcc 1
Score = 46.1 bits (23), Expect = 9e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 17 aaactaccgttagatcgagaaat 39
|||||||||||||||||||||||
Sbjct: 11 aaactaccgttagatcgagaaat 33
>49887_osa-miRf10672-akr:pmrd
Length = 113
Score = 50.1 bits (25), Expect = 6e-07
Identities = 46/53 (86%)
Strand = Plus / Minus
Query: 76 aaaatttttactcacgagtaaatctgtgagtaaaatttttactcgtgatgacg 128
|||||||| ||||| |||| ||||||||||| ||||||| |||| || |||||
Sbjct: 68 aaaattttaactcatgagtgaatctgtgagttaaattttaactcatggtgacg 16
>49978_osa-miRf10763-akr:pmrd
Length = 148
Score = 48.1 bits (24), Expect = 2e-06
Identities = 57/68 (83%)
Strand = Plus / Minus
Query: 73 agtaaaatttttactcacgagtaaatctgtgagtaaaatttttactcgtgatgacgtgaa 132
||||||||||| ||||| |||| |||||| |||| ||||||| |||| | ||||||| |
Sbjct: 86 agtaaaattttaactcatgagtgaatctgcgagttaaattttaactcagggtgacgtgga 27
Query: 133 caaatctc 140
| ||||||
Sbjct: 26 cgaatctc 19
>50629_osa-miRf11414-akr:pmrd
Length = 137
Score = 46.1 bits (23), Expect = 9e-06
Identities = 35/39 (89%)
Strand = Plus / Minus
Query: 103 gagtaaaatttttactcgtgatgacgtgaacaaatctca 141
|||| ||||||| ||| |||||||||||||| |||||||
Sbjct: 42 gagttaaattttaacttgtgatgacgtgaacgaatctca 4
Score = 46.1 bits (23), Expect = 9e-06
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 103 gagtaaaatttttactcgtgatgacgtgaacaaatctca 141
|||| ||||||| ||||||||||||||| || |||||||
Sbjct: 96 gagttaaattttaactcgtgatgacgtggacgaatctca 134
>49999_osa-miRf10784-akr:pmrd
Length = 128
Score = 46.1 bits (23), Expect = 9e-06
Identities = 35/39 (89%)
Strand = Plus / Minus
Query: 103 gagtaaaatttttactcgtgatgacgtgaacaaatctca 141
|||| ||||||| ||||||||||||||| || |||||||
Sbjct: 45 gagttaaattttaactcgtgatgacgtggacgaatctca 7
Score = 46.1 bits (23), Expect = 9e-06
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 103 gagtaaaatttttactcgtgatgacgtgaacaaatctca 141
|||| ||||||| ||||||||||||||| || |||||||
Sbjct: 84 gagttaaattttaactcgtgatgacgtggacgaatctca 122
>49047_osa-miR811c:pmrd
Length = 159
Score = 42.1 bits (21), Expect = 1e-04
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 22 accgttagatcgagaaataaatgttcgagaatcatccacgt 62
|||||||||||||||||| | |||||||| || |||||||
Sbjct: 1 accgttagatcgagaaatggacgttcgagattcgtccacgt 41
