miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>48810_osa-miR156j:pmrd
Length = 165
Score = 224 bits (113), Expect = 1e-59
Identities = 124/129 (96%)
Strand = Plus / Plus
Query: 1 agcatatgaaaggcgagattgttgacagaagagagtnagcacacggcgcggcggctagcc 60
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 20 agcatatgaaaggcgagattgttgacagaagagagtgagcacacggcgcggcggctagcc 79
Query: 61 atcggggngatgcctgccccngccgcgtgctcgctcctctttctgtcagcatctctcatc 120
||||| | |||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 80 atcggcgggatgcctgcccccgccgcgtgctcgctcctctttctgtcagcatctctcatc 139
Query: 121 antccctcc 129
| |||||||
Sbjct: 140 actccctcc 148
>48808_osa-miR156h:pmrd
Length = 101
Score = 174 bits (88), Expect = 1e-44
Identities = 97/101 (96%)
Strand = Plus / Plus
Query: 15 gagattgttgacagaagagagtnagcacacggcgcggcggctagccatcggggngatgcc 74
|||||||||||||||||||||| |||||||||||||||||||||||||||| | ||||||
Sbjct: 1 gagattgttgacagaagagagtgagcacacggcgcggcggctagccatcggcgggatgcc 60
Query: 75 tgccccngccgcgtgctcgctcctctttctgtcagcatctc 115
|||||| ||||||||||||||||||||||||||||||||||
Sbjct: 61 tgcccccgccgcgtgctcgctcctctttctgtcagcatctc 101
>48813_osa-miR156m:pmrd
Length = 86
Score = 145 bits (73), Expect = 9e-36
Identities = 82/86 (95%)
Strand = Plus / Plus
Query: 23 tgacagaagagagtnagcacacggcgcggcggctagccatcggggngatgcctgccccng 82
|||||||||||||| |||||||||||||||||||||||||||| | |||||||||||| |
Sbjct: 1 tgacagaagagagtgagcacacggcgcggcggctagccatcggcgggatgcctgcccccg 60
Query: 83 ccgcgtgctcgctcctctttctgtca 108
||||||||||||||||||||||||||
Sbjct: 61 ccgcgtgctcgctcctctttctgtca 86
>54397_sbi-miR156e:pmrd
Length = 123
Score = 58.0 bits (29), Expect = 2e-09
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 78 cccngccgcgtgctcgctcctctttctgtcagcatctctc 117
||| |||||||||||||| |||||||||||||| ||||||
Sbjct: 74 ccccgccgcgtgctcgcttctctttctgtcagcctctctc 113
>54921_zma-miR156k:pmrd
Length = 123
Score = 54.0 bits (27), Expect = 3e-08
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 78 cccngccgcgtgctcgctcctctttctgtcagcatctc 115
||| |||||||||||||| |||||||||||||| ||||
Sbjct: 74 ccccgccgcgtgctcgcttctctttctgtcagcctctc 111
>54914_zma-miR156d:pmrd
Length = 119
Score = 52.0 bits (26), Expect = 1e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 22 ttgacagaagagagtnagcacacggcgcg 50
||||||||||||||| |||||||||||||
Sbjct: 15 ttgacagaagagagtgagcacacggcgcg 43
Score = 42.1 bits (21), Expect = 1e-04
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 82 gccgcgtgctcgctcctctttctgtcagc 110
||||||||||| || ||||||||||||||
Sbjct: 73 gccgcgtgctcacttctctttctgtcagc 101
>54402_sbi-miR157:pmrd
Length = 86
Score = 52.0 bits (26), Expect = 1e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 22 ttgacagaagagagtnagcacacggcgcg 50
||||||||||||||| |||||||||||||
Sbjct: 1 ttgacagaagagagtgagcacacggcgcg 29
>48817_osa-miR156q:pmrd
Length = 243
Score = 52.0 bits (26), Expect = 1e-07
Identities = 38/41 (92%), Gaps = 1/41 (2%)
Strand = Plus / Plus
Query: 3 catatgaaaggcg-agattgttgacagaagagagtnagcac 42
||||||||||||| ||||||||||||||| ||||| |||||
Sbjct: 203 catatgaaaggcgtagattgttgacagaacagagtgagcac 243
>54923_zma-miR156n:pmrd
Length = 84
Score = 50.1 bits (25), Expect = 4e-07
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 23 tgacagaagagagtnagcacacggcgcg 50
|||||||||||||| |||||||||||||
Sbjct: 1 tgacagaagagagtgagcacacggcgcg 28
>54393_sbi-miR156a:pmrd
Length = 84
Score = 50.1 bits (25), Expect = 4e-07
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 23 tgacagaagagagtnagcacacggcgcg 50
|||||||||||||| |||||||||||||
Sbjct: 1 tgacagaagagagtgagcacacggcgcg 28
>48804_osa-miR156d:pmrd
Length = 129
Score = 48.1 bits (24), Expect = 2e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 22 ttgacagaagagagtnagcacacggcg 48
||||||||||||||| |||||||||||
Sbjct: 19 ttgacagaagagagtgagcacacggcg 45
Score = 46.1 bits (23), Expect = 6e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 82 gccgcgtgctcgctcctctttctgtca 108
||||||||||| |||||||||||||||
Sbjct: 77 gccgcgtgctcactcctctttctgtca 103
>54919_zma-miR156i:pmrd
Length = 117
Score = 44.1 bits (22), Expect = 2e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 23 tgacagaagagagtnagcacacggc 47
|||||||||||||| ||||||||||
Sbjct: 13 tgacagaagagagtgagcacacggc 37
>54918_zma-miR156h:pmrd
Length = 115
Score = 44.1 bits (22), Expect = 2e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 23 tgacagaagagagtnagcacacggc 47
|||||||||||||| ||||||||||
Sbjct: 20 tgacagaagagagtgagcacacggc 44
>54915_zma-miR156e:pmrd
Length = 126
Score = 44.1 bits (22), Expect = 2e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 23 tgacagaagagagtnagcacacggc 47
|||||||||||||| ||||||||||
Sbjct: 20 tgacagaagagagtgagcacacggc 44
>54400_sbi-miR156h:pmrd
Length = 94
Score = 44.1 bits (22), Expect = 2e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 23 tgacagaagagagtnagcacacggc 47
|||||||||||||| ||||||||||
Sbjct: 2 tgacagaagagagtgagcacacggc 26
>54399_sbi-miR156g:pmrd
Length = 89
Score = 44.1 bits (22), Expect = 2e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 23 tgacagaagagagtnagcacacggc 47
|||||||||||||| ||||||||||
Sbjct: 2 tgacagaagagagtgagcacacggc 26
>48809_osa-miR156i:pmrd
Length = 90
Score = 44.1 bits (22), Expect = 2e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 23 tgacagaagagagtnagcacacggc 47
|||||||||||||| ||||||||||
Sbjct: 3 tgacagaagagagtgagcacacggc 27
>48805_osa-miR156e:pmrd
Length = 104
Score = 44.1 bits (22), Expect = 2e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 23 tgacagaagagagtnagcacacggc 47
|||||||||||||| ||||||||||
Sbjct: 10 tgacagaagagagtgagcacacggc 34
>52469_ptc-miRf10647-akr:pmrd
Length = 104
Score = 42.1 bits (21), Expect = 1e-04
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 21 gttgacagaagagagtnagcacac 44
|||||||||||||||| |||||||
Sbjct: 95 gttgacagaagagagtgagcacac 72
>51594_ptc-miR156d:pmrd
Length = 101
Score = 42.1 bits (21), Expect = 1e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 21 gttgacagaagagagtnagcacac 44
|||||||||||||||| |||||||
Sbjct: 9 gttgacagaagagagtgagcacac 32
>48806_osa-miR156f:pmrd
Length = 186
Score = 42.1 bits (21), Expect = 1e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 21 gttgacagaagagagtnagcacac 44
|||||||||||||||| |||||||
Sbjct: 2 gttgacagaagagagtgagcacac 25
>48491_ghr-miR156d:pmrd
Length = 96
Score = 42.1 bits (21), Expect = 1e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 22 ttgacagaagagagtnagcacacg 45
||||||||||||||| ||||||||
Sbjct: 8 ttgacagaagagagtgagcacacg 31
>47667_ath-miRf10567-akr:pmrd
Length = 98
Score = 42.1 bits (21), Expect = 1e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 21 gttgacagaagagagtnagcacac 44
|||||||||||||||| |||||||
Sbjct: 4 gttgacagaagagagtgagcacac 27
>46913_ath-miR156d:pmrd
Length = 118
Score = 42.1 bits (21), Expect = 1e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 21 gttgacagaagagagtnagcacac 44
|||||||||||||||| |||||||
Sbjct: 16 gttgacagaagagagtgagcacac 39
>54912_zma-miR156b:pmrd
Length = 124
Score = 40.1 bits (20), Expect = 4e-04
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 22 ttgacagaagagagtnagcacac 44
||||||||||||||| |||||||
Sbjct: 20 ttgacagaagagagtgagcacac 42
>54656_stu-miR156a:pmrd
Length = 86
Score = 40.1 bits (20), Expect = 4e-04
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 23 tgacagaagagagtnagcacacg 45
|||||||||||||| ||||||||
Sbjct: 1 tgacagaagagagtgagcacacg 23
>54569_smo-miR156a:pmrd
Length = 102
Score = 40.1 bits (20), Expect = 4e-04
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 24 gacagaagagagtnagcacacgg 46
||||||||||||| |||||||||
Sbjct: 12 gacagaagagagtgagcacacgg 34
>51595_ptc-miR156e:pmrd
Length = 100
Score = 40.1 bits (20), Expect = 4e-04
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 22 ttgacagaagagagtnagcacac 44
||||||||||||||| |||||||
Sbjct: 10 ttgacagaagagagtgagcacac 32
>49326_osa-miRf10111-akr:pmrd
Length = 100
Score = 40.1 bits (20), Expect = 4e-04
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 23 tgacagaagagagtnagcacacg 45
|||||||||||||| ||||||||
Sbjct: 7 tgacagaagagagtgagcacacg 29
>48801_osa-miR156a:pmrd
Length = 100
Score = 40.1 bits (20), Expect = 4e-04
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 23 tgacagaagagagtnagcacacg 45
|||||||||||||| ||||||||
Sbjct: 7 tgacagaagagagtgagcacacg 29
>48425_cpt-miR156a:pmrd
Length = 101
Score = 40.1 bits (20), Expect = 4e-04
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 23 tgacagaagagagtnagcacacg 45
|||||||||||||| ||||||||
Sbjct: 11 tgacagaagagagtgagcacacg 33
