miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>48967_osa-miR399d:pmrd
Length = 286
Score = 567 bits (286), Expect = e-162
Identities = 286/286 (100%)
Strand = Plus / Minus
Query: 29 aagacagtcgcagggcaactctcctttggcaggccgttttggtgaattcaatcgctacat 88
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 286 aagacagtcgcagggcaactctcctttggcaggccgttttggtgaattcaatcgctacat 227
Query: 89 ggcgatcgatcaaagctagtagcagctggtatatacatacatgcacataaccaaccgata 148
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 226 ggcgatcgatcaaagctagtagcagctggtatatacatacatgcacataaccaaccgata 167
Query: 149 tatgatggtctatcaaaggccaccatgtatatatatacacaatgcaatcacatatggatg 208
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 166 tatgatggtctatcaaaggccaccatgtatatatatacacaatgcaatcacatatggatg 107
Query: 209 attgcaatgtagcaccatggccggactgtatataccttggatgcatatacaattacaaaa 268
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 106 attgcaatgtagcaccatggccggactgtatataccttggatgcatatacaattacaaaa 47
Query: 269 tcacctagaatgcacctgccagaggagagctgcctactactgtctt 314
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46 tcacctagaatgcacctgccagaggagagctgcctactactgtctt 1
>54492_sbi-miR399d:pmrd
Length = 205
Score = 63.9 bits (32), Expect = 8e-11
Identities = 32/32 (100%)
Strand = Plus / Minus
Query: 30 agacagtcgcagggcaactctcctttggcagg 61
||||||||||||||||||||||||||||||||
Sbjct: 195 agacagtcgcagggcaactctcctttggcagg 164
Score = 60.0 bits (30), Expect = 1e-09
Identities = 33/34 (97%)
Strand = Plus / Minus
Query: 283 cctgccagaggagagctgcctactactgtcttca 316
||||||||||||||||||||||| ||||||||||
Sbjct: 42 cctgccagaggagagctgcctacaactgtcttca 9
>54878_vvi-miR399b:pmrd
Length = 117
Score = 46.1 bits (23), Expect = 2e-05
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 33 cagtcgcagggcaactctcctttggca 59
||||| |||||||||||||||||||||
Sbjct: 113 cagtcacagggcaactctcctttggca 87
>48088_ath-miRf10988-akr:pmrd
Length = 129
Score = 46.1 bits (23), Expect = 2e-05
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 39 cagggcaactctcctttggcagg 61
|||||||||||||||||||||||
Sbjct: 122 cagggcaactctcctttggcagg 100
>47473_ath-miRf10373-akr:pmrd
Length = 125
Score = 46.1 bits (23), Expect = 2e-05
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 39 cagggcaactctcctttggcagg 61
|||||||||||||||||||||||
Sbjct: 120 cagggcaactctcctttggcagg 98
>47472_ath-miRf10372-akr:pmrd
Length = 131
Score = 46.1 bits (23), Expect = 2e-05
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 39 cagggcaactctcctttggcagg 61
|||||||||||||||||||||||
Sbjct: 123 cagggcaactctcctttggcagg 101
>47016_ath-miR399b:pmrd
Length = 135
Score = 46.1 bits (23), Expect = 2e-05
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 39 cagggcaactctcctttggcagg 61
|||||||||||||||||||||||
Sbjct: 125 cagggcaactctcctttggcagg 103
>55098_zma-miR399h:pmrd
Length = 85
Score = 44.1 bits (22), Expect = 7e-05
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 39 cagggcaactctcctttggcag 60
||||||||||||||||||||||
Sbjct: 85 cagggcaactctcctttggcag 64
>55095_zma-miR399e:pmrd
Length = 124
Score = 44.1 bits (22), Expect = 7e-05
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 39 cagggcaactctcctttggcag 60
||||||||||||||||||||||
Sbjct: 105 cagggcaactctcctttggcag 84
>54879_vvi-miR399c:pmrd
Length = 82
Score = 44.1 bits (22), Expect = 7e-05
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 39 cagggcaactctcctttggcag 60
||||||||||||||||||||||
Sbjct: 72 cagggcaactctcctttggcag 51
>54497_sbi-miR399i:pmrd
Length = 121
Score = 44.1 bits (22), Expect = 7e-05
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 39 cagggcaactctcctttggcag 60
||||||||||||||||||||||
Sbjct: 102 cagggcaactctcctttggcag 81
>54885_vvi-miR399i:pmrd
Length = 122
Score = 42.1 bits (21), Expect = 3e-04
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 34 agtcgcagggcaactctcctttggc 58
|||| ||||||||||||||||||||
Sbjct: 117 agtcacagggcaactctcctttggc 93
>54381_pvu-miR399a:pmrd
Length = 223
Score = 42.1 bits (21), Expect = 3e-04
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 39 cagggcaactctcctttggca 59
|||||||||||||||||||||
Sbjct: 109 cagggcaactctcctttggca 89
>48973_osa-miR399j:pmrd
Length = 106
Score = 42.1 bits (21), Expect = 3e-04
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 40 agggcaactctcctttggcag 60
|||||||||||||||||||||
Sbjct: 95 agggcaactctcctttggcag 75
>48756_mtr-miR399g:pmrd
Length = 74
Score = 42.1 bits (21), Expect = 3e-04
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 39 cagggcaactctcctttggca 59
|||||||||||||||||||||
Sbjct: 74 cagggcaactctcctttggca 54
>47017_ath-miR399c:pmrd
Length = 114
Score = 42.1 bits (21), Expect = 3e-04
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 39 cagggcaactctcctttggca 59
|||||||||||||||||||||
Sbjct: 104 cagggcaactctcctttggca 84
>46891_aqc-miR399:pmrd
Length = 98
Score = 42.1 bits (21), Expect = 3e-04
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 40 agggcaactctcctttggcag 60
|||||||||||||||||||||
Sbjct: 91 agggcaactctcctttggcag 71
