miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>49004_osa-miR442:pmrd
Length = 233
Score = 222 bits (112), Expect = 1e-58
Identities = 163/179 (91%), Gaps = 1/179 (0%)
Strand = Plus / Plus
Query: 101 cgtgtaaattatgagacgaatcttttaagcctanatacgccatgatttgatgatgttgtg 160
|||||||||| ||||||||||||||||||||| | | ||||||| ||| |||| |||
Sbjct: 55 cgtgtaaattgcgagacgaatcttttaagcctaattgctccatgatctgacaatgtggtg 114
Query: 161 ctacagtaaacatttgctaatgacggattaattaggcttaataaattcgtctcgcggttt 220
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 115 ctacagtaaacatttgctaatgacggattaattaggcttaataaattcgtctcgcagttt 174
Query: 221 acatacggattttgtaatttgttttgttattagactacgtttaata-ttcaaatgtgtg 278
||| ||||||| ||||||||||||||||||||| ||||||| |||| ||||||||||||
Sbjct: 175 acagacggattctgtaatttgttttgttattagtctacgttaaatacttcaaatgtgtg 233
>50895_osa-miRf11680-akr:pmrd
Length = 145
Score = 153 bits (77), Expect = 1e-37
Identities = 115/128 (89%)
Strand = Plus / Plus
Query: 96 gattgcgtgtaaattatgagacgaatcttttaagcctanatacgccatgatttgatgatg 155
||||||||||||||| |||||| |||||||||||||| | | |||| |||||| |||
Sbjct: 5 gattgcgtgtaaattgcgagacggatcttttaagcctaattgcaccataatttgacaatg 64
Query: 156 ttgtgctacagtaaacatttgctaatgacggattaattaggcttaataaattcgtctcgc 215
| |||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 65 tggtgctaaagtaaacatttgctaatgatggattaattaggcttaataaattcgtctcgc 124
Query: 216 ggtttaca 223
||||||||
Sbjct: 125 ggtttaca 132
>50149_osa-miRf10934-akr:pmrd
Length = 143
Score = 105 bits (53), Expect = 2e-23
Identities = 85/96 (88%)
Strand = Plus / Plus
Query: 113 gagacgaatcttttaagcctanatacgccatgatttgatgatgttgtgctacagtaaaca 172
||||||||||||||| ||||| | |||||| |||| | |||||||| |||| ||||||
Sbjct: 21 gagacgaatcttttaggcctaattgcgccataatttaacaatgttgtggtacaataaaca 80
Query: 173 tttgctaatgacggattaattaggcttaataaattc 208
||||||||||||||||||||||||||| ||||||||
Sbjct: 81 tttgctaatgacggattaattaggcttcataaattc 116
>49008_osa-miR445a:pmrd
Length = 268
Score = 87.7 bits (44), Expect = 5e-18
Identities = 88/103 (85%)
Strand = Plus / Minus
Query: 113 gagacgaatcttttaagcctanatacgccatgatttgatgatgttgtgctacagtaaaca 172
|||||||||||||| || ||| ||| ||||||||||| |||| |||||||||||||
Sbjct: 184 gagacgaatcttttgagtctaattacaccatgatttgacaatgtgatgctacagtaaact 125
Query: 173 tttgctaatgacggattaattaggcttaataaattcgtctcgc 215
||| |||| | ||||||||||||||||| |||||||||||||
Sbjct: 124 tttcataattatggattaattaggcttaaaaaattcgtctcgc 82
>50021_osa-miRf10806-akr:pmrd
Length = 123
Score = 71.9 bits (36), Expect = 3e-13
Identities = 59/66 (89%), Gaps = 3/66 (4%)
Strand = Plus / Minus
Query: 158 gtgctacagtaa---acatttgctaatgacggattaattaggcttaataaattcgtctcg 214
|||||||||||| |||| |||||||||||||||||||||||| || | ||||||||||
Sbjct: 68 gtgctacagtaatccacatgtgctaatgacggattaattaggctcaaaagattcgtctcg 9
Query: 215 cggttt 220
||||||
Sbjct: 8 cggttt 3
Score = 42.1 bits (21), Expect = 3e-04
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 113 gagacgaatcttttaagccta 133
|||||||||||||||||||||
Sbjct: 114 gagacgaatcttttaagccta 94
>49455_osa-miRf10240-akr:pmrd
Length = 128
Score = 61.9 bits (31), Expect = 3e-10
Identities = 46/51 (90%)
Strand = Plus / Plus
Query: 170 acatttgctaatgacggattaattaggcttaataaattcgtctcgcggttt 220
|||| ||||||| |||||||||||||||| || | ||||||||||||||||
Sbjct: 72 acatgtgctaataacggattaattaggctcaaaagattcgtctcgcggttt 122
>51249_osa-miRf12034-akr:pmrd
Length = 121
Score = 60.0 bits (30), Expect = 1e-09
Identities = 42/46 (91%)
Strand = Plus / Plus
Query: 175 tgctaatgacggattaattaggcttaataaattcgtctcgcggttt 220
|||||||||||||||||||||||| || | |||| |||||||||||
Sbjct: 74 tgctaatgacggattaattaggctcaagagattcatctcgcggttt 119
>49588_osa-miRf10373-akr:pmrd
Length = 139
Score = 60.0 bits (30), Expect = 1e-09
Identities = 36/38 (94%)
Strand = Plus / Minus
Query: 269 caaatgtgtgcccgtatatccgatgtgacacgccaaaa 306
|||||||||| |||||||||||||| ||||||||||||
Sbjct: 139 caaatgtgtgtccgtatatccgatgcgacacgccaaaa 102
Score = 52.0 bits (26), Expect = 3e-07
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 269 caaatgtgtgcccgtatatccgatgtgacacgccaaaa 306
|||||||||| | ||||||||||||||||||| |||||
Sbjct: 1 caaatgtgtgtctgtatatccgatgtgacacggcaaaa 38
>49410_osa-miRf10195-akr:pmrd
Length = 111
Score = 60.0 bits (30), Expect = 1e-09
Identities = 39/42 (92%)
Strand = Plus / Minus
Query: 275 tgtgcccgtatatccgatgtgacacgccaaaactttacaccc 316
|||| ||||||| | |||||||||||||||||||||||||||
Sbjct: 111 tgtgtccgtatacctgatgtgacacgccaaaactttacaccc 70
>51000_osa-miRf11785-akr:pmrd
Length = 128
Score = 56.0 bits (28), Expect = 2e-08
Identities = 57/66 (86%), Gaps = 3/66 (4%)
Strand = Plus / Minus
Query: 158 gtgctacagtaa---acatttgctaatgacggattaattaggcttaataaattcgtctcg 214
|||||||||||| |||| || ||||||||| ||||||||||| || | ||||||||||
Sbjct: 72 gtgctacagtaacctacatgtgttaatgacggcttaattaggctcaaaagattcgtctcg 13
Query: 215 cggttt 220
||||||
Sbjct: 12 cggttt 7
>49733_osa-miRf10518-akr:pmrd
Length = 122
Score = 56.0 bits (28), Expect = 2e-08
Identities = 40/44 (90%)
Strand = Plus / Minus
Query: 177 ctaatgacggattaattaggcttaataaattcgtctcgcggttt 220
|||||||||| ||||||||||| || | ||||||||||||||||
Sbjct: 47 ctaatgacggcttaattaggctcaaaagattcgtctcgcggttt 4
>49474_osa-miRf10259-akr:pmrd
Length = 81
Score = 56.0 bits (28), Expect = 2e-08
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 267 ttcaaatgtgtgcccgtatatccgatgtgacacgccaaaa 306
|||||||||||| ||||||||||||| ||||||| |||||
Sbjct: 8 ttcaaatgtgtgtccgtatatccgatatgacacggcaaaa 47
>49015_osa-miR445h:pmrd
Length = 277
Score = 54.0 bits (27), Expect = 7e-08
Identities = 30/31 (96%)
Strand = Plus / Minus
Query: 185 ggattaattaggcttaataaattcgtctcgc 215
||||||||||||||||| |||||||||||||
Sbjct: 125 ggattaattaggcttaaaaaattcgtctcgc 95
>49014_osa-miR445g:pmrd
Length = 275
Score = 54.0 bits (27), Expect = 7e-08
Identities = 30/31 (96%)
Strand = Plus / Minus
Query: 185 ggattaattaggcttaataaattcgtctcgc 215
||||||||||||||||| |||||||||||||
Sbjct: 124 ggattaattaggcttaaaaaattcgtctcgc 94
>49012_osa-miR445e:pmrd
Length = 265
Score = 54.0 bits (27), Expect = 7e-08
Identities = 30/31 (96%)
Strand = Plus / Minus
Query: 185 ggattaattaggcttaataaattcgtctcgc 215
||||||||||||||||| |||||||||||||
Sbjct: 119 ggattaattaggcttaaaaaattcgtctcgc 89
>49010_osa-miR445c:pmrd
Length = 260
Score = 54.0 bits (27), Expect = 7e-08
Identities = 30/31 (96%)
Strand = Plus / Minus
Query: 185 ggattaattaggcttaataaattcgtctcgc 215
||||||||||||||||| |||||||||||||
Sbjct: 117 ggattaattaggcttaaaaaattcgtctcgc 87
Score = 48.1 bits (24), Expect = 4e-06
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 113 gagacgaatcttttaagcctanatacgccatgatt 147
||||||||||||||||||||| ||| ||||||||
Sbjct: 172 gagacgaatcttttaagcctaattacaccatgatt 138
>49652_osa-miRf10437-akr:pmrd
Length = 120
Score = 48.1 bits (24), Expect = 4e-06
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 177 ctaatgacggattaattaggcttaataaattcgtctcgcggttt 220
||||||| |||||||||| ||| || | ||||||||||||||||
Sbjct: 75 ctaatgatggattaattatgctcaaaagattcgtctcgcggttt 118
>51304_osa-miRf12089-akr:pmrd
Length = 120
Score = 46.1 bits (23), Expect = 2e-05
Identities = 38/43 (88%)
Strand = Plus / Minus
Query: 170 acatttgctaatgacggattaattaggcttaataaattcgtct 212
|||| ||||||||||| |||||||||||| || | ||||||||
Sbjct: 53 acatgtgctaatgacgaattaattaggctcaaaagattcgtct 11
>49013_osa-miR445f:pmrd
Length = 305
Score = 46.1 bits (23), Expect = 2e-05
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 185 ggattaattaggcttaataaattcgtc 211
||||||||||||||||| |||||||||
Sbjct: 140 ggattaattaggcttaaaaaattcgtc 114
>49011_osa-miR445d:pmrd
Length = 312
Score = 46.1 bits (23), Expect = 2e-05
Identities = 38/43 (88%)
Strand = Plus / Plus
Query: 159 tgctacagtaaacatttgctaatgacggattaattaggcttaa 201
||||||| ||||||| || |||| | |||||||||||||||||
Sbjct: 151 tgctacactaaacatgtgttaattatggattaattaggcttaa 193
>49009_osa-miR445b:pmrd
Length = 264
Score = 46.1 bits (23), Expect = 2e-05
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 185 ggattaattaggcttaataaattcgtctcgc 215
||||||||||||||||| || ||||||||||
Sbjct: 118 ggattaattaggcttaaaaagttcgtctcgc 88
