miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>49615_osa-miRf10400-akr:pmrd
Length = 85
Score = 73.8 bits (37), Expect = 2e-14
Identities = 67/77 (87%)
Strand = Plus / Plus
Query: 10 tggatgtgacacattctaacactacaaatctgtacagcgaacctgtccagattcatagta 69
||||||| |||||||||| |||||||||||| || | || |||||||| ||||||||||
Sbjct: 4 tggatgtaacacattctagtactacaaatctggactgggagcctgtccaaattcatagta 63
Query: 70 ctaggatatgtcacatc 86
||||||| |||| ||||
Sbjct: 64 ctaggatgtgtcccatc 80
>50369_osa-miRf11154-akr:pmrd
Length = 74
Score = 58.0 bits (29), Expect = 1e-09
Identities = 41/45 (91%)
Strand = Plus / Plus
Query: 52 ctgtccagattcatagtactaggatatgtcacatcaacccaaaat 96
|||||||||||||| || ||||||| ||||||||| |||||||||
Sbjct: 26 ctgtccagattcattgtgctaggatgtgtcacatccacccaaaat 70
>49466_osa-miRf10251-akr:pmrd
Length = 83
Score = 58.0 bits (29), Expect = 1e-09
Identities = 35/37 (94%)
Strand = Plus / Minus
Query: 50 acctgtccagattcatagtactaggatatgtcacatc 86
|||||||||||||| |||||||||||| |||||||||
Sbjct: 52 acctgtccagattcgtagtactaggatgtgtcacatc 16
>49067_osa-miR818a:pmrd
Length = 144
Score = 54.0 bits (27), Expect = 2e-08
Identities = 33/35 (94%)
Strand = Plus / Minus
Query: 53 tgtccagattcatagtactaggatatgtcacatca 87
||||||||||||| ||||||||||||||||||||
Sbjct: 68 tgtccagattcattatactaggatatgtcacatca 34
>50838_osa-miRf11623-akr:pmrd
Length = 86
Score = 52.0 bits (26), Expect = 7e-08
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 53 tgtccagattcatagtactaggatatgtcacatc 86
|||| ||||||||||||||||||| |||||||||
Sbjct: 44 tgtcaagattcatagtactaggatgtgtcacatc 77
Score = 42.1 bits (21), Expect = 7e-05
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 62 tcatagtactaggatatgtcacatc 86
||||||||||||||| |||||||||
Sbjct: 34 tcatagtactaggatgtgtcacatc 10
>50334_osa-miRf11119-akr:pmrd
Length = 99
Score = 50.1 bits (25), Expect = 3e-07
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 60 attcatagtactaggatatgtcacatcaacccaaaat 96
|||| |||||||||||||||||||||| | |||||||
Sbjct: 61 attcgtagtactaggatatgtcacatccaaccaaaat 97
>50080_osa-miRf10865-akr:pmrd
Length = 85
Score = 50.1 bits (25), Expect = 3e-07
Identities = 40/45 (88%)
Strand = Plus / Plus
Query: 52 ctgtccagattcatagtactaggatatgtcacatcaacccaaaat 96
|||||||||||||| ||||||||| ||| ||||| |||||||||
Sbjct: 37 ctgtccagattcatcatactaggatgtgttacatccacccaaaat 81
>49688_osa-miRf10473-akr:pmrd
Length = 76
Score = 50.1 bits (25), Expect = 3e-07
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 50 acctgtccagattcatagtactaggatatgtcacatc 86
|||||||||||||| |||||||||||| |||| ||||
Sbjct: 31 acctgtccagattcgtagtactaggatgtgtcccatc 67
>49435_osa-miRf10220-akr:pmrd
Length = 103
Score = 46.1 bits (23), Expect = 5e-06
Identities = 38/43 (88%)
Strand = Plus / Plus
Query: 53 tgtccagattcatagtactaggatatgtcacatcaacccaaaa 95
||||||||||| ||| |||||||| |||| |||| ||||||||
Sbjct: 55 tgtccagattcgtagcactaggatgtgtctcatccacccaaaa 97
>51164_osa-miRf11949-akr:pmrd
Length = 148
Score = 44.1 bits (22), Expect = 2e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 57 cagattcatagtactaggatatgtcacatc 86
||||||||||||||||||| |||||||||
Sbjct: 107 cagattcatagtactaggacgtgtcacatc 136
>49963_osa-miRf10748-akr:pmrd
Length = 91
Score = 44.1 bits (22), Expect = 2e-05
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 53 tgtccagattcatagtactaggatatgtcacatc 86
||||||||||||| ||||||||| |||||||||
Sbjct: 42 tgtccagattcatcatactaggatgtgtcacatc 9
Score = 40.1 bits (20), Expect = 3e-04
Identities = 32/36 (88%)
Strand = Plus / Plus
Query: 51 cctgtccagattcatagtactaggatatgtcacatc 86
|||||||| |||||| ||||||||||| |||||||
Sbjct: 48 cctgtccaaattcattgtactaggatacatcacatc 83
