miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>48876_osa-miR169a:pmrd
Length = 173
Score = 317 bits (160), Expect = 1e-87
Identities = 160/160 (100%)
Strand = Plus / Plus
Query: 1 ggcggcctgacattgggatcggaggccatggtgcagccaaggatgacttgccgatcgatc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5 ggcggcctgacattgggatcggaggccatggtgcagccaaggatgacttgccgatcgatc 64
Query: 61 gatctatctatgaagctaagctagctggccatggatccatccatcaattggcaagttgtt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65 gatctatctatgaagctaagctagctggccatggatccatccatcaattggcaagttgtt 124
Query: 121 cttggctacatcttggcccctgctcctcatgtaaggccgg 160
||||||||||||||||||||||||||||||||||||||||
Sbjct: 125 cttggctacatcttggcccctgctcctcatgtaaggccgg 164
>55003_zma-miR169a:pmrd
Length = 130
Score = 63.9 bits (32), Expect = 3e-11
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 28 atggtgcagccaaggatgacttgccgatcgat 59
||||||||||||||||||||||||||||||||
Sbjct: 15 atggtgcagccaaggatgacttgccgatcgat 46
Score = 52.0 bits (26), Expect = 1e-07
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 110 ggcaagttgttcttggctacatcttggcccctgctcct 147
||||||||||||||||||||| | |||| |||||||||
Sbjct: 92 ggcaagttgttcttggctacaccgtggctcctgctcct 129
>54437_sbi-miR169a:pmrd
Length = 91
Score = 60.0 bits (30), Expect = 5e-10
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 34 cagccaaggatgacttgccgatcgatcgat 63
||||||||||||||||||||||||||||||
Sbjct: 1 cagccaaggatgacttgccgatcgatcgat 30
>55004_zma-miR169b:pmrd
Length = 156
Score = 56.0 bits (28), Expect = 8e-09
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 30 ggtgcagccaaggatgacttgccgatcgatcg 61
||||||||||||||||||||||||||| ||||
Sbjct: 17 ggtgcagccaaggatgacttgccgatctatcg 48
Score = 52.0 bits (26), Expect = 1e-07
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 110 ggcaagttgttcttggctacatcttggcccctgctcct 147
||||||||||||||||||||| | |||| |||||||||
Sbjct: 118 ggcaagttgttcttggctacaccgtggctcctgctcct 155
>54809_vvi-miR169g:pmrd
Length = 121
Score = 54.0 bits (27), Expect = 3e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 28 atggtgcagccaaggatgacttgccga 54
|||||||||||||||||||||||||||
Sbjct: 7 atggtgcagccaaggatgacttgccga 33
>54808_vvi-miR169f:pmrd
Length = 184
Score = 54.0 bits (27), Expect = 3e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 28 atggtgcagccaaggatgacttgccga 54
|||||||||||||||||||||||||||
Sbjct: 7 atggtgcagccaaggatgacttgccga 33
>55023_zma-miR169u:pmrd
Length = 90
Score = 52.0 bits (26), Expect = 1e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 34 cagccaaggatgacttgccgatcgat 59
||||||||||||||||||||||||||
Sbjct: 1 cagccaaggatgacttgccgatcgat 26
>54825_vvi-miR169w:pmrd
Length = 143
Score = 50.1 bits (25), Expect = 5e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 29 tggtgcagccaaggatgacttgccg 53
|||||||||||||||||||||||||
Sbjct: 8 tggtgcagccaaggatgacttgccg 32
>51663_ptc-miR169f:pmrd
Length = 239
Score = 50.1 bits (25), Expect = 5e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 29 tggtgcagccaaggatgacttgccg 53
|||||||||||||||||||||||||
Sbjct: 6 tggtgcagccaaggatgacttgccg 30
>48351_bna-miR169b:pmrd
Length = 188
Score = 50.1 bits (25), Expect = 5e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 31 gtgcagccaaggatgacttgccgat 55
|||||||||||||||||||||||||
Sbjct: 15 gtgcagccaaggatgacttgccgat 39
>48350_bna-miR169a:pmrd
Length = 132
Score = 50.1 bits (25), Expect = 5e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 31 gtgcagccaaggatgacttgccgat 55
|||||||||||||||||||||||||
Sbjct: 16 gtgcagccaaggatgacttgccgat 40
>46960_ath-miR169a:pmrd
Length = 226
Score = 50.1 bits (25), Expect = 5e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 31 gtgcagccaaggatgacttgccgat 55
|||||||||||||||||||||||||
Sbjct: 15 gtgcagccaaggatgacttgccgat 39
>55022_zma-miR169t:pmrd
Length = 116
Score = 48.1 bits (24), Expect = 2e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 34 cagccaaggatgacttgccgatcgatcg 61
||||||||||||||||||||||| ||||
Sbjct: 1 cagccaaggatgacttgccgatctatcg 28
>54549_sly-miR169c:pmrd
Length = 147
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 31 gtgcagccaaggatgacttgccga 54
||||||||||||||||||||||||
Sbjct: 38 gtgcagccaaggatgacttgccga 61
>48562_gma-miR169b:pmrd
Length = 183
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 32 tgcagccaaggatgacttgccgat 55
||||||||||||||||||||||||
Sbjct: 9 tgcagccaaggatgacttgccgat 32
>54813_vvi-miR169k:pmrd
Length = 122
Score = 46.1 bits (23), Expect = 8e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 31 gtgcagccaaggatgacttgccg 53
|||||||||||||||||||||||
Sbjct: 10 gtgcagccaaggatgacttgccg 32
>54812_vvi-miR169j:pmrd
Length = 122
Score = 46.1 bits (23), Expect = 8e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 31 gtgcagccaaggatgacttgccg 53
|||||||||||||||||||||||
Sbjct: 10 gtgcagccaaggatgacttgccg 32
>52003_ptc-miRf10181-akr:pmrd
Length = 113
Score = 46.1 bits (23), Expect = 8e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 32 tgcagccaaggatgacttgccga 54
|||||||||||||||||||||||
Sbjct: 8 tgcagccaaggatgacttgccga 30
Score = 40.1 bits (20), Expect = 5e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 108 ttggcaagttgttcttggctacat 131
|||||| |||||||||||||||||
Sbjct: 84 ttggcaggttgttcttggctacat 107
>51660_ptc-miR169c:pmrd
Length = 102
Score = 46.1 bits (23), Expect = 8e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 32 tgcagccaaggatgacttgccga 54
|||||||||||||||||||||||
Sbjct: 9 tgcagccaaggatgacttgccga 31
>51659_ptc-miR169b:pmrd
Length = 113
Score = 46.1 bits (23), Expect = 8e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 32 tgcagccaaggatgacttgccga 54
|||||||||||||||||||||||
Sbjct: 9 tgcagccaaggatgacttgccga 31
Score = 40.1 bits (20), Expect = 5e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 108 ttggcaagttgttcttggctacat 131
|||||| |||||||||||||||||
Sbjct: 85 ttggcaggttgttcttggctacat 108
>51652_ptc-miR169a:pmrd
Length = 165
Score = 46.1 bits (23), Expect = 8e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 32 tgcagccaaggatgacttgccga 54
|||||||||||||||||||||||
Sbjct: 9 tgcagccaaggatgacttgccga 31
>48718_mtr-miR169b:pmrd
Length = 121
Score = 46.1 bits (23), Expect = 8e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 32 tgcagccaaggatgacttgccga 54
|||||||||||||||||||||||
Sbjct: 19 tgcagccaaggatgacttgccga 41
>48717_mtr-miR169a:pmrd
Length = 121
Score = 46.1 bits (23), Expect = 8e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 32 tgcagccaaggatgacttgccga 54
|||||||||||||||||||||||
Sbjct: 19 tgcagccaaggatgacttgccga 41
>48309_bdi-miR169a:pmrd
Length = 121
Score = 46.1 bits (23), Expect = 8e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 32 tgcagccaaggatgacttgccga 54
|||||||||||||||||||||||
Sbjct: 14 tgcagccaaggatgacttgccga 36
>55005_zma-miR169c:pmrd
Length = 134
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 32 tgcagccaaggatgacttgccg 53
||||||||||||||||||||||
Sbjct: 19 tgcagccaaggatgacttgccg 40
>54821_vvi-miR169s:pmrd
Length = 99
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 32 tgcagccaaggatgacttgccg 53
||||||||||||||||||||||
Sbjct: 11 tgcagccaaggatgacttgccg 32
>54805_vvi-miR169c:pmrd
Length = 90
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 32 tgcagccaaggatgacttgccg 53
||||||||||||||||||||||
Sbjct: 11 tgcagccaaggatgacttgccg 32
>54803_vvi-miR169a:pmrd
Length = 124
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 32 tgcagccaaggatgacttgccg 53
||||||||||||||||||||||
Sbjct: 11 tgcagccaaggatgacttgccg 32
>54547_sly-miR169a:pmrd
Length = 149
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 32 tgcagccaaggatgacttgccg 53
||||||||||||||||||||||
Sbjct: 39 tgcagccaaggatgacttgccg 60
>52491_ptc-miRf10669-akr:pmrd
Length = 110
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 110 ggcaagttgttcttggctacat 131
||||||||||||||||||||||
Sbjct: 87 ggcaagttgttcttggctacat 108
>51683_ptc-miR169z:pmrd
Length = 118
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 110 ggcaagttgttcttggctacat 131
||||||||||||||||||||||
Sbjct: 92 ggcaagttgttcttggctacat 113
>51664_ptc-miR169g:pmrd
Length = 106
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 32 tgcagccaaggatgacttgccg 53
||||||||||||||||||||||
Sbjct: 9 tgcagccaaggatgacttgccg 30
>51661_ptc-miR169d:pmrd
Length = 111
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 32 tgcagccaaggatgacttgccg 53
||||||||||||||||||||||
Sbjct: 9 tgcagccaaggatgacttgccg 30
>51339_phy-miR169:pmrd
Length = 146
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 32 tgcagccaaggatgacttgccg 53
||||||||||||||||||||||
Sbjct: 13 tgcagccaaggatgacttgccg 34
>50631_osa-miRf11416-akr:pmrd
Length = 141
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 32 tgcagccaaggatgacttgccg 53
||||||||||||||||||||||
Sbjct: 125 tgcagccaaggatgacttgccg 104
>50630_osa-miRf11415-akr:pmrd
Length = 147
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 32 tgcagccaaggatgacttgccg 53
||||||||||||||||||||||
Sbjct: 20 tgcagccaaggatgacttgccg 41
>49845_osa-miRf10630-akr:pmrd
Length = 114
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 32 tgcagccaaggatgacttgccg 53
||||||||||||||||||||||
Sbjct: 105 tgcagccaaggatgacttgccg 84
>48891_osa-miR169p:pmrd
Length = 126
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 32 tgcagccaaggatgacttgccg 53
||||||||||||||||||||||
Sbjct: 118 tgcagccaaggatgacttgccg 97
>48878_osa-miR169c:pmrd
Length = 112
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 32 tgcagccaaggatgacttgccg 53
||||||||||||||||||||||
Sbjct: 9 tgcagccaaggatgacttgccg 30
>48877_osa-miR169b:pmrd
Length = 128
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 32 tgcagccaaggatgacttgccg 53
||||||||||||||||||||||
Sbjct: 9 tgcagccaaggatgacttgccg 30
>48561_gma-miR169a:pmrd
Length = 121
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 32 tgcagccaaggatgacttgccg 53
||||||||||||||||||||||
Sbjct: 19 tgcagccaaggatgacttgccg 40
>47961_ath-miRf10861-akr:pmrd
Length = 109
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 32 tgcagccaaggatgacttgccg 53
||||||||||||||||||||||
Sbjct: 3 tgcagccaaggatgacttgccg 24
>47674_ath-miRf10574-akr:pmrd
Length = 123
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 32 tgcagccaaggatgacttgccg 53
||||||||||||||||||||||
Sbjct: 114 tgcagccaaggatgacttgccg 93
>46961_ath-miR169b:pmrd
Length = 181
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 32 tgcagccaaggatgacttgccg 53
||||||||||||||||||||||
Sbjct: 41 tgcagccaaggatgacttgccg 62
>46875_aqc-miR169c:pmrd
Length = 111
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 32 tgcagccaaggatgacttgccg 53
||||||||||||||||||||||
Sbjct: 3 tgcagccaaggatgacttgccg 24
>55021_zma-miR169s:pmrd
Length = 150
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 34 cagccaaggatgacttgccga 54
|||||||||||||||||||||
Sbjct: 1 cagccaaggatgacttgccga 21
>54446_sbi-miR169j:pmrd
Length = 123
Score = 42.1 bits (21), Expect = 1e-04
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 35 agccaaggatgacttgccgatcgatcgat 63
||||||||||||||||||| ||||||||
Sbjct: 4 agccaaggatgacttgccggccgatcgat 32
>54367_ptr-miR169a:pmrd
Length = 101
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 34 cagccaaggatgacttgccga 54
|||||||||||||||||||||
Sbjct: 1 cagccaaggatgacttgccga 21
>51662_ptc-miR169e:pmrd
Length = 166
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 33 gcagccaaggatgacttgccg 53
|||||||||||||||||||||
Sbjct: 10 gcagccaaggatgacttgccg 30
>48719_mtr-miR169c:pmrd
Length = 82
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 34 cagccaaggatgacttgccga 54
|||||||||||||||||||||
Sbjct: 82 cagccaaggatgacttgccga 62
>46964_ath-miR169e:pmrd
Length = 217
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 35 agccaaggatgacttgccgat 55
|||||||||||||||||||||
Sbjct: 71 agccaaggatgacttgccgat 91
>46963_ath-miR169d:pmrd
Length = 154
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 35 agccaaggatgacttgccgat 55
|||||||||||||||||||||
Sbjct: 43 agccaaggatgacttgccgat 63
>55020_zma-miR169r:pmrd
Length = 95
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 34 cagccaaggatgacttgccg 53
||||||||||||||||||||
Sbjct: 1 cagccaaggatgacttgccg 20
>54447_sbi-miR169k:pmrd
Length = 97
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 34 cagccaaggatgacttgccg 53
||||||||||||||||||||
Sbjct: 1 cagccaaggatgacttgccg 20
>54438_sbi-miR169b:pmrd
Length = 102
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 34 cagccaaggatgacttgccg 53
||||||||||||||||||||
Sbjct: 1 cagccaaggatgacttgccg 20
>54091_ptc-miRf12269-akr:pmrd
Length = 122
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 34 cagccaaggatgacttgccg 53
||||||||||||||||||||
Sbjct: 111 cagccaaggatgacttgccg 92
>52526_ptc-miRf10704-akr:pmrd
Length = 120
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 34 cagccaaggatgacttgccg 53
||||||||||||||||||||
Sbjct: 110 cagccaaggatgacttgccg 91
>51676_ptc-miR169s:pmrd
Length = 120
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 34 cagccaaggatgacttgccg 53
||||||||||||||||||||
Sbjct: 12 cagccaaggatgacttgccg 31
>51665_ptc-miR169h:pmrd
Length = 118
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 34 cagccaaggatgacttgccg 53
||||||||||||||||||||
Sbjct: 11 cagccaaggatgacttgccg 30
>48639_gso-miR169a:pmrd
Length = 103
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 34 cagccaaggatgacttgccg 53
||||||||||||||||||||
Sbjct: 1 cagccaaggatgacttgccg 20
>48564_gma-miR169p:pmrd
Length = 111
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 34 cagccaaggatgacttgccg 53
||||||||||||||||||||
Sbjct: 1 cagccaaggatgacttgccg 20
>48563_gma-miR169c:pmrd
Length = 115
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 35 agccaaggatgacttgccga 54
||||||||||||||||||||
Sbjct: 12 agccaaggatgacttgccga 31
>46962_ath-miR169c:pmrd
Length = 411
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 34 cagccaaggatgacttgccg 53
||||||||||||||||||||
Sbjct: 113 cagccaaggatgacttgccg 132
>46859_ama-miR169:pmrd
Length = 100
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 35 agccaaggatgacttgccga 54
||||||||||||||||||||
Sbjct: 15 agccaaggatgacttgccga 34
